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    Samd10 sterile alpha motif domain containing 10 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499957, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Samd10provided by RGD
    Official Full Name
    sterile alpha motif domain containing 10provided by RGD
    Primary source
    RGD:1563203
    See related
    EnsemblRapid:ENSRNOG00000036719 AllianceGenome:RGD:1563203
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563203
    Summary
    Predicted to be involved in cell surface receptor protein tyrosine kinase signaling pathway. Predicted to be active in cytoplasmic side of plasma membrane. Orthologous to human SAMD10 (sterile alpha motif domain containing 10). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 126.1), Kidney (RPKM 41.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Samd10 in Genome Data Viewer
    Location:
    3q43
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (189077795..189082069, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (168700280..168704427, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (177091467..177095599, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uridine-cytidine kinase 1-like 1 Neighboring gene zinc finger protein 512B Neighboring gene pre-mRNA processing factor 6 Neighboring gene long intergenic non-protein coding RNA 176

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in cell surface receptor protein tyrosine kinase signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasmic side of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    sterile alpha motif domain-containing protein 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191967.1 → NP_001178896.1  sterile alpha motif domain-containing protein 10

      See identical proteins and their annotated locations for NP_001178896.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A6KLY8
      Conserved Domains (1) summary
      cd09510
      Location:113 → 187
      SAM_aveugle-like; SAM domain of aveugle-like subfamily

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      189077795..189082069 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006235798.4 → XP_006235860.1  sterile alpha motif domain-containing protein 10 isoform X1

      Related
      ENSRNOP00000102250.1, ENSRNOT00000163761.1
      Conserved Domains (1) summary
      cd09510
      Location:85 → 159
      SAM_aveugle-like; SAM domain of aveugle-like subfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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