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    Fam222a family with sequence similarity 222, member A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498193, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Fam222aprovided by RGD
    Official Full Name
    family with sequence similarity 222, member Aprovided by RGD
    Primary source
    RGD:1565883
    See related
    EnsemblRapid:ENSRNOG00000001198 AllianceGenome:RGD:1565883
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565883
    Summary
    Orthologous to human FAM222A (family with sequence similarity 222 member A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 37.6), Brain (RPKM 6.5) and 5 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Fam222a in Genome Data Viewer
    Location:
    12q16
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (47647221..47693703, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (41982064..42033085, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (47742449..47793534, complement)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene glycolipid transfer protein Neighboring gene transient receptor potential cation channel, subfamily V, member 4 Neighboring gene uncharacterized LOC134481208 Neighboring gene transfer RNA alanine (anticodon AGC) 100

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein FAM222A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109067.1 → NP_001102537.1  protein FAM222A

      See identical proteins and their annotated locations for NP_001102537.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473973
      UniProtKB/TrEMBL
      A6J1Z5, D3ZY38
      Related
      ENSRNOP00000001588.2, ENSRNOT00000001588.6
      Conserved Domains (1) summary
      pfam15258
      Location:35 → 452
      FAM222A; Protein family of FAM222A

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      47647221..47693703 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063271599.1 → XP_063127669.1  protein FAM222A isoform X3

      UniProtKB/TrEMBL
      A6J1Z5, D3ZY38

    2. XM_017598444.3 → XP_017453933.1  protein FAM222A isoform X3

      UniProtKB/TrEMBL
      A6J1Z5, D3ZY38
      Conserved Domains (1) summary
      pfam15258
      Location:35 → 452
      FAM222A; Protein family of FAM222A

    3. XM_008769352.4 → XP_008767574.2  protein FAM222A isoform X3

      UniProtKB/TrEMBL
      A6J1Z5, D3ZY38
      Conserved Domains (1) summary
      pfam15258
      Location:35 → 452
      FAM222A; Protein family of FAM222A

    4. XM_039089709.2 → XP_038945637.1  protein FAM222A isoform X2

      UniProtKB/TrEMBL
      A0A8I6ALN9
      Related
      ENSRNOP00000089749.1, ENSRNOT00000095969.2
      Conserved Domains (1) summary
      pfam15258
      Location:40 → 457
      FAM222A; Protein family of FAM222A

    5. XM_063271598.1 → XP_063127668.1  protein FAM222A isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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