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    GABARAPL3 GABA type A receptor associated protein like 3 (pseudogene) [ Homo sapiens (human) ]

    Gene ID: 23766, updated on 4-Jan-2025

    Summary

    Official Symbol
    GABARAPL3provided by HGNC
    Official Full Name
    GABA type A receptor associated protein like 3 (pseudogene)provided by HGNC
    Primary source
    HGNC:HGNC:4069
    See related
    AllianceGenome:HGNC:4069
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ATG8D
    Summary
    Predicted to enable GABA receptor binding activity; phosphatidylethanolamine binding activity; and ubiquitin protein ligase binding activity. Predicted to be involved in cellular response to nitrogen starvation and macroautophagy. Predicted to be located in cytoplasmic vesicle; membrane; and microtubule. Predicted to be active in autophagosome membrane. [provided by Alliance of Genome Resources, Jan 2025]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See GABARAPL3 in Genome Data Viewer
    Location:
    15q26.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (90346527..90349447, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (88102539..88105459, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (90889759..90892679, complement)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr15:90830396-90830960 Neighboring gene NIFK pseudogene 5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:90836448-90836948 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:90836949-90837449 Neighboring gene RNA, 7SL, cytoplasmic 736, pseudogene Neighboring gene GOLGA2 pseudogene 8 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:90843353-90843545 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:90843890-90844650 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10074 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10075 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10076 Neighboring gene zinc finger protein 774 Neighboring gene Sharpr-MPRA regulatory region 12979 Neighboring gene NADH:ubiquinone oxidoreductase subunit A3 pseudogene 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Phenotypes

    BioGRID CRISPR Screen Phenotypes (0 hits/41 screens)

    EBI GWAS Catalog

    Description
    Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.
    EBI GWAS Catalog

    Interactions

    General gene information

    Other Names

    • GABA(A) receptors associated protein like 3, pseudogene

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables GABA receptor binding  
    enables phosphatidylethanolamine binding  
    enables ubiquitin protein ligase binding  
    Process Evidence Code Pubs
    involved_in autophagosome assembly  
    involved_in autophagosome maturation  
    involved_in cellular response to nitrogen starvation  
    involved_in mitophagy  
    Component Evidence Code Pubs
    is_active_in autophagosome membrane  
    located_in cytoplasmic vesicle  
    located_in microtubule  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028287.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC018946

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      90346527..90349447 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      88102539..88105459 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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