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    Ccdc92 coiled-coil domain containing 92 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100036765, updated on 9-Dec-2024

    Summary

    Symbol
    Ccdc92provided by RGD
    Full Name
    coiled-coil domain containing 92provided by RGD
    Primary source
    RGD:1601131
    See related
    EnsemblRapid:ENSRNOG00000021691 AllianceGenome:RGD:1601131
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable identical protein binding activity. Predicted to be located in centrosome and nucleoplasm. Predicted to be active in centriole. Orthologous to human CCDC92 (coiled-coil domain containing 92). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 287.8), Brain (RPKM 72.9) and 3 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Ccdc92 in Genome Data Viewer
    Location:
    12q15
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (37457676..37484080)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (31796102..31823333)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (37210735..37237848)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene refilin A Neighboring gene zinc finger protein 664 Neighboring gene ribosomal protein L27 like 5 Neighboring gene dynein, axonemal, heavy chain 10 Neighboring gene eukaryotic translation initiation factor 1 pseudogene Neighboring gene uncharacterized LOC120095966 Neighboring gene ATPase H+ transporting V0 subunit a2

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Clone Names

    • MGC94942

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in centriole IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in centriole ISO
    Inferred from Sequence Orthology
    more info
     
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 92

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001083898.1NP_001077367.1  coiled-coil domain-containing protein 92

      See identical proteins and their annotated locations for NP_001077367.1

      Status: VALIDATED

      Source sequence(s)
      CB580061, CB796650, CV103813, DV717215, DY309716
      UniProtKB/TrEMBL
      A6J0X7, D3ZBX9
      Related
      ENSRNOP00000108848.1, ENSRNOT00000127376.1
      Conserved Domains (2) summary
      pfam14916
      Location:763
      CCDC92; Coiled-coil domain of unknown function
      cl21478
      Location:62134
      ATP-synt_B; ATP synthase B/B' CF(0)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      37457676..37484080
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)