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    Nhsl3 NHS like 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500552, updated on 9-Dec-2024

    Summary

    Official Symbol
    Nhsl3provided by RGD
    Official Full Name
    NHS like 3provided by RGD
    Primary source
    RGD:1561149
    See related
    EnsemblRapid:ENSRNOG00000008113 AllianceGenome:RGD:1561149
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Hapstr1; RGD1561149
    Summary
    Predicted to be involved in cell differentiation. Orthologous to human NHSL3 (NHS like 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 61.5), Adrenal (RPKM 33.9) and 8 other tissues See more
    Orthologs
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    Genomic context

    See Nhsl3 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (146848747..146877504, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (141564399..141593154, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (147403948..147427587, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene S100P binding protein Neighboring gene U6 spliceosomal RNA Neighboring gene tyrosyl-tRNA synthetase 1 Neighboring gene large ribosomal subunit protein uL23-like Neighboring gene syncoilin, intermediate filament protein Neighboring gene RB binding protein 4, chromatin remodeling factor

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    NHS like 3
    Names
    HUWE1 associated protein modifying stress responses
    Nance-Horan syndrome protein like 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134629.2NP_001128101.1  NHS like 3 isoform 3

      See identical proteins and their annotated locations for NP_001128101.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A6ISI0, D3ZQK5
      Related
      ENSRNOP00000010688.5, ENSRNOT00000010688.9
      Conserved Domains (1) summary
      PHA03247
      Location:722996
      PHA03247; large tegument protein UL36; Provisional
    2. NM_001415956.1NP_001402885.1  NHS like 3 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A0A8I6B5N9
      Related
      ENSRNOP00000097368.1, ENSRNOT00000097184.2
    3. NM_001415958.1NP_001402887.1  NHS like 3 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A0A8I5ZS30
      Related
      ENSRNOP00000081359.1, ENSRNOT00000108263.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      146848747..146877504 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)