U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    Slx9 SLX9 ribosome biogenesis factor [ Rattus norvegicus (Norway rat) ]

    Gene ID: 294333, updated on 9-Dec-2024

    Summary

    Official Symbol
    Slx9provided by RGD
    Official Full Name
    SLX9 ribosome biogenesis factorprovided by RGD
    Primary source
    RGD:1311257
    See related
    EnsemblRapid:ENSRNOG00000001225 AllianceGenome:RGD:1311257
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam207a; RGD1311257
    Summary
    Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleolus. Predicted to be part of 90S preribosome and preribosome, small subunit precursor. Orthologous to human SLX9 (SLX9 ribosome biogenesis factor). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 64.6), Kidney (RPKM 55.3) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Slx9 in Genome Data Viewer
    Location:
    20p12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (11114214..11147112)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (11114632..11147532)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (11863145..11896833)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene transfer RNA proline (anticodon AGG) 81 Neighboring gene integrin subunit beta 2 Neighboring gene uncharacterized LOC120099012 Neighboring gene uncharacterized LOC120098928 Neighboring gene small nucleolar RNA SNORA44 Neighboring gene NME/NM23 nucleoside diphosphate kinase 2, pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Clone Names

    • MGC94567

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    part_of 90S preribosome  
    located_in nucleolus  
    part_of preribosome, small subunit precursor  

    General protein information

    Preferred Names
    ribosome biogenesis protein SLX9 homolog
    Names
    family with sequence similarity 207, member A

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008307.2NP_001008308.1  ribosome biogenesis protein SLX9 homolog

      See identical proteins and their annotated locations for NP_001008308.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000020
      UniProtKB/TrEMBL
      F7F4R7, Q5XII4
      Related
      ENSRNOP00000001640.3, ENSRNOT00000001640.8
      Conserved Domains (1) summary
      pfam15341
      Location:87210
      SLX9; Ribosome biogenesis protein SLX9

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      11114214..11147112
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    External link. Please review our privacy policy.