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    FAM106C family with sequence similarity 106 member C [ Homo sapiens (human) ]

    Gene ID: 100129396, updated on 10-Dec-2024

    Summary

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    Official Symbol
    FAM106Cprovided by HGNC
    Official Full Name
    family with sequence similarity 106 member Cprovided by HGNC
    Primary source
    HGNC:HGNC:38396
    See related
    Ensembl:ENSG00000288235 AllianceGenome:HGNC:38396
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FAM106CP
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    Genomic context

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    See FAM106C in Genome Data Viewer
    Location:
    17p11.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (16788879..16790501)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (16691584..16693206)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (16692193..16693815)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 144A Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11770 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16654874-16655606 Neighboring gene UPF3A pseudogene 1 Neighboring gene ubiquitin specific peptidase 32 pseudogene 1 Neighboring gene signal recognition particle 68 pseudogene 1 Neighboring gene distal SMS-REP block A recombination region Neighboring gene MPRA-validated peak2752 silencer Neighboring gene uncharacterized LOC105371552 Neighboring gene nitric oxide synthase 2 pseudogene 4 Neighboring gene keratin 16 pseudogene 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs. Park SS, et al. Genome Res, 2002 May. PMID 11997339, Free PMC Article
    2. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. Zody MC, et al. Nature, 2006 Apr 20. PMID 16625196, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • FAM106C pseudogene
    • FLJ11800 related
    • family with sequence similarity 106 member C, pseudogene
    • putative protein FAM106C

    Clone Names

    • MGC120421, MGC120423

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_170993.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC098850
      Related
      ENST00000582212.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      16788879..16790501
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      16691584..16693206
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001348162.1: Suppressed sequence

      Description
      NM_001348162.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0CH98.1 GenPept UniProtKB/Swiss-Prot:P0CH98

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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    Research Materials