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    Clec2d2l2 C-type lectin domain family 2 member D2 like 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 689770, updated on 27-Dec-2024

    Summary

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    Official Symbol
    Clec2d2l2provided by RGD
    Official Full Name
    C-type lectin domain family 2 member D2 like 2provided by RGD
    Primary source
    RGD:1588718
    See related
    EnsemblRapid:ENSRNOG00000069744 AllianceGenome:RGD:1588718
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Clr4; Clec2d4
    Summary
    Predicted to enable natural killer cell lectin-like receptor binding activity. Predicted to be located in plasma membrane. Predicted to be active in external side of plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Clec2d2l2 in Genome Data Viewer
    Location:
    4q42
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (163836496..163852526, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (162150431..162166457, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100912974 Neighboring gene C-type lectin domain family 2 member D2 Neighboring gene C-type lectin domain family 2 member D2 like 1 Neighboring gene C-type lectin domain family 2, member D Neighboring gene protein phosphatase 2, regulatory subunit B', alpha like 1 Neighboring gene uncharacterized LOC102549299 Neighboring gene C-type lectin domain family 2 member D-like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two major groups of rat NKR-P1 receptors can be distinguished based on chromosomal localization, phylogenetic analysis and Clr ligand binding. Kveberg L, et al. Eur J Immunol, 2009 Feb. PMID 19130483
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables natural killer cell lectin-like receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in external side of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    C-type lectin domain family 2 member d4
    Names
    C-type lectin-related protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001142304.1 → NP_001135776.1  C-type lectin domain family 2 member d4

      See identical proteins and their annotated locations for NP_001135776.1

      Status: VALIDATED

      Source sequence(s)
      CK843446, FJ404474
      UniProtKB/TrEMBL
      B7TXW6, B8PS69
      Conserved Domains (1) summary
      cd03593
      Location:130 → 243
      CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      163836496..163852526 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039108384.2 → XP_038964312.1  C-type lectin domain family 2 member d4 isoform X1

      UniProtKB/TrEMBL
      B8PS69, F7FPR5
      Related
      ENSRNOP00000040749.6, ENSRNOT00000042872.8
      Conserved Domains (1) summary
      PHA02642
      Location:106 → 276
      PHA02642; C-type lectin-like protein; Provisional
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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