U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Zcchc10 zinc finger CCHC-type containing 10 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360524, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Zcchc10provided by RGD
    Official Full Name
    zinc finger CCHC-type containing 10provided by RGD
    Primary source
    RGD:1308149
    See related
    EnsemblRapid:ENSRNOG00000006943 AllianceGenome:RGD:1308149
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZCCHC10 (zinc finger CCHC-type containing 10). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 31.4), Heart (RPKM 28.9) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Zcchc10 in Genome Data Viewer
    Location:
    10q22
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (37971459..37981860)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (37470628..37481027)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (38664020..38674419)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene heat shock protein family A (Hsp70) member 4 Neighboring gene ribosomal protein S2, pseudogene 16 Neighboring gene 60S ribosomal protein L14 pseudogene Neighboring gene ALF transcription elongation factor 4 Neighboring gene ribosomal protein L10, pseudogene 1 Neighboring gene uncharacterized LOC134480791

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc finger CCHC domain-containing protein 10
    Names
    zinc finger, CCHC domain containing 10

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001271026.1 → NP_001257955.1  zinc finger CCHC domain-containing protein 10

      Status: PROVISIONAL

      Source sequence(s)
      BC089894
      UniProtKB/Swiss-Prot
      Q5EB97
      Related
      ENSRNOP00000102834.1, ENSRNOT00000144477.1
      Conserved Domains (1) summary
      pfam13917
      Location:13 → 52
      zf-CCHC_3; Zinc knuckle

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      37971459..37981860
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5EB97.2 GenPept UniProtKB/Swiss-Prot:Q5EB97

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools