Tmem87b transmembrane protein 87B [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Tmem87bprovided by RGD
Official Full Name: transmembrane protein 87Bprovided by RGD
Primary source: RGD:1307907
See related: EnsemblRapid:ENSRNOG00000017443 AllianceGenome:RGD:1307907
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1307907
Summary: Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to be located in Golgi membrane and cytosol. Predicted to be active in Golgi cisterna membrane. Orthologous to human TMEM87B (transmembrane protein 87B). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Kidney (RPKM 105.9), Lung (RPKM 104.8) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 3q36

Exon count:: 22

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	3	NC_086021.1 (136515155..136550644)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	3	NC_051338.1 (116061933..116097421)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	3	NC_005102.4 (121357787..121393443)

Chromosome 3 - NC_086021.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

BF399205 (e-PCR)
- UniSTS:247579

D3Rat256 (e-PCR), detects polymorphism
- UniSTS:227641

BE106315 (e-PCR)
- UniSTS:246229

Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in retrograde transport, endosome to Golgi	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within retrograde transport, endosome to Golgi	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
is_active_in Golgi apparatus	IBA Inferred from Biological aspect of Ancestor more info
is_active_in Golgi cisterna membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in Golgi membrane	IEA Inferred from Electronic Annotation more info
located_in cytosol	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: transmembrane protein 87B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001191854.1 → NP_001178783.1 transmembrane protein 87B precursor

Status: PROVISIONAL

Source sequence(s)

JAXUCZ010000003

UniProtKB/TrEMBL

A6HQ39

Conserved Domains (1) summary

pfam06814
Location:175 → 459

Lung_7-TM_R; Lung seven transmembrane receptor