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    Fam219a family with sequence similarity 219, member A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 691024, updated on 9-Dec-2024

    Summary

    Official Symbol
    Fam219aprovided by RGD
    Official Full Name
    family with sequence similarity 219, member Aprovided by RGD
    Primary source
    RGD:1588668
    See related
    EnsemblRapid:ENSRNOG00000039559 AllianceGenome:RGD:1588668
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human FAM219A (family with sequence similarity 219 member A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 127.3), Lung (RPKM 53.5) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Fam219a in Genome Data Viewer
    Location:
    5q22
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (61475185..61525749, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (56679272..56729959, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (57896824..57947569, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene myogenesis regulating glycosidase Neighboring gene sperm microtubule inner protein 6 Neighboring gene uncharacterized LOC102553821 Neighboring gene dynein, axonemal, intermediate chain 1 Neighboring gene energy homeostasis associated

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001415979.1NP_001402908.1  protein FAM219A

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      D4AAI7
      Related
      ENSRNOP00000057375.4, ENSRNOT00000060642.5

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      61475185..61525749 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063288449.1XP_063144519.1  protein FAM219A isoform X6

    2. XM_063288448.1XP_063144518.1  protein FAM219A isoform X5

      UniProtKB/TrEMBL
      A6IIV8
    3. XM_063288447.1XP_063144517.1  protein FAM219A isoform X2

    4. XM_006238103.5XP_006238165.1  protein FAM219A isoform X4

      Conserved Domains (1) summary
      pfam15260
      Location:37164
      FAM219A; Protein family FAM219A
    5. XM_006238102.5XP_006238164.1  protein FAM219A isoform X3

      See identical proteins and their annotated locations for XP_006238164.1

      UniProtKB/TrEMBL
      A6IIV9
      Conserved Domains (1) summary
      pfam15260
      Location:37165
      FAM219A; Protein family FAM219A
    6. XM_006238101.5XP_006238163.1  protein FAM219A isoform X1

      Conserved Domains (1) summary
      pfam15260
      Location:54181
      FAM219A; Protein family FAM219A

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