U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Spa17 sperm autoantigenic protein 17 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 85244, updated on 27-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Spa17provided by RGD
    Official Full Name
    sperm autoantigenic protein 17provided by RGD
    Primary source
    RGD:620154
    See related
    EnsemblRapid:ENSRNOG00000010934 AllianceGenome:RGD:620154
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Sp17
    Summary
    Predicted to be involved in binding activity of sperm to zona pellucida. Predicted to be located in several cellular components, including external side of plasma membrane; neuron projection; and sperm flagellum. Orthologous to human SPA17 (sperm autoantigenic protein 17). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 1241.3), Kidney (RPKM 78.8) and 1 other tissue See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Spa17 in Genome Data Viewer
    Location:
    8q22
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (45496175..45507262, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (37307432..37318519, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (40066954..40078131, complement)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103693043 Neighboring gene uncharacterized LOC108351844 Neighboring gene sialic acid acetylesterase Neighboring gene transforming growth factor beta regulator 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Cancer-testis antigens as biomarkers for Merkel cell carcinoma: Pitfalls and opportunities. Dasgeb B, et al. J Cutan Pathol, 2019 Oct. PMID 31218705, Free PMC Article
    2. Overexpression of human sperm protein 17 increases migration and decreases the chemosensitivity of human epithelial ovarian cancer cells. Li FQ, et al. BMC Cancer, 2009 Sep 11. PMID 19744347, Free PMC Article
    3. Sperm protein 17 is expressed in the sperm fibrous sheath. Chiriva-Internati M, et al. J Transl Med, 2009 Jul 15. PMID 19604394, Free PMC Article
    4. Sequence and localization of the mouse sperm autoantigenic protein, Sp17. Kong M, et al. Biol Reprod, 1995 Sep. PMID 7578682
    5. Characterization of Sp17: a ubiquitous three domain protein that binds heparin. Wen Y, et al. Biochem J, 2001 Jul 1. PMID 11415432, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in binding of sperm to zona pellucida IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cilium ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in external side of plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in motile cilium ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in neuron projection ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in sperm fibrous sheath ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in sperm principal piece ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    sperm surface protein Sp17

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_053482.2 → NP_445934.1  sperm surface protein Sp17

      See identical proteins and their annotated locations for NP_445934.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A6KRK5, F7FLV9, Q9Z1K2
      Related
      ENSRNOP00000014866.1, ENSRNOT00000014866.5
      Conserved Domains (3) summary
      smart00015
      Location:114 → 132
      IQ; Calmodulin-binding motif
      cd12100
      Location:12 → 50
      DD_CABYR_SP17; Dimerization/Docking domain of the sperm fibrous sheath proteins, Calcium-Binding tYrosine-phosphorylation Regulated protein and Sperm Protein 17
      cd22307
      Location:74 → 143
      Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      45496175..45507262 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017595948.3 → XP_017451437.1  sperm surface protein Sp17 isoform X1

      UniProtKB/TrEMBL
      A6KRK5, F7FLV9, Q9Z1K2
      Conserved Domains (3) summary
      smart00015
      Location:114 → 132
      IQ; Calmodulin-binding motif
      cd12100
      Location:12 → 50
      DD_CABYR_SP17; Dimerization/Docking domain of the sperm fibrous sheath proteins, Calcium-Binding tYrosine-phosphorylation Regulated protein and Sperm Protein 17
      cd22307
      Location:74 → 143
      Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools