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    Prrt1b proline rich transmembrane protein 1B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102546892, updated on 27-Dec-2024

    Summary

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    Symbol
    Prrt1bprovided by RGD
    Full Name
    proline rich transmembrane protein 1Bprovided by RGD
    Primary source
    RGD:7582623
    See related
    EnsemblRapid:ENSRNOG00000046655 AllianceGenome:RGD:7582623
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    AABR07051395.1
    Summary
    Predicted to be active in membrane. Orthologous to human PRRT1B (proline rich transmembrane protein 1B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 26.7), Heart (RPKM 5.4) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Prrt1b in Genome Data Viewer
    Location:
    3p12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (33418432..33426492, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (13019852..13028865, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (8312385..8317837, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene Rap guanine nucleotide exchange factor 1 Neighboring gene uncharacterized LOC134486065 Neighboring gene uncharacterized LOC134486064 Neighboring gene golgin A2 like 1 Neighboring gene uncharacterized LOC134486066

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    proline rich transmembrane protein 1B
    Names
    proline-rich protein HaeIII subfamily 1
    proline-rich protein HaeIII subfamily 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001430746.1 → NP_001417675.1  proline rich transmembrane protein 1B isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      M0RCN8

    2. NM_001430747.1 → NP_001417676.1  proline rich transmembrane protein 1B isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      33418432..33426492 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006233903.5 → XP_006233965.1  proline rich transmembrane protein 1B isoform X1

      Related
      ENSRNOP00000112394.1, ENSRNOT00000148897.1
      Conserved Domains (1) summary
      pfam04505
      Location:162 → 235
      CD225; Interferon-induced transmembrane protein

    2. XM_063284838.1 → XP_063140908.1  proline rich transmembrane protein 1B isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials