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    1700109H08Rikl RIKEN cDNA 1700109H08 gene like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500007, updated on 14-Nov-2024

    Summary

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    Official Symbol
    1700109H08Riklprovided by RGD
    Official Full Name
    RIKEN cDNA 1700109H08 gene likeprovided by RGD
    Primary source
    RGD:1588445
    See related
    EnsemblRapid:ENSRNOG00000009135 AllianceGenome:RGD:1588445
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Testes (RPKM 52.1), Thymus (RPKM 37.2) and 9 other tissues See more
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    Genomic context

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    See 1700109H08Rikl in Genome Data Viewer
    Location:
    4q13
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (31523787..31544317, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (30569045..30589503, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (27708212..27728730, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene GATA zinc finger domain containing 1 Neighboring gene peroxisomal biogenesis factor 1 Neighboring gene RNA binding motif protein 48 Neighboring gene family with sequence similarity 133, member B Neighboring gene uncharacterized LOC134486561 Neighboring gene cyclin-dependent kinase 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables calcium ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    calaxin-like
    Names
    EF-hand calcium-binding domain-containing protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      31523787..31544317 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039108582.2 → XP_038964510.1  calaxin-like isoform X2

      UniProtKB/TrEMBL
      A6K288
      Conserved Domains (1) summary
      COG5126
      Location:23 → 128
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    2. XM_006236077.5 → XP_006236139.1  calaxin-like isoform X1

      See identical proteins and their annotated locations for XP_006236139.1

      UniProtKB/TrEMBL
      F1LX06
      Related
      ENSRNOP00000060110.3, ENSRNOT00000068499.4
      Conserved Domains (2) summary
      pfam13499
      Location:105 → 174
      EF-hand_7; EF-hand domain pair
      cl08302
      Location:104 → 175
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Research Materials