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    Mix23 mitochondrial matrix import factor 23 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 288065, updated on 9-Dec-2024

    Summary

    Official Symbol
    Mix23provided by RGD
    Official Full Name
    mitochondrial matrix import factor 23provided by RGD
    Primary source
    RGD:1564582
    See related
    EnsemblRapid:ENSRNOG00000031653 AllianceGenome:RGD:1564582
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Ccdc58; RGD1564582
    Summary
    Predicted to be located in mitochondrial intermembrane space. Predicted to be active in mitochondrion. Orthologous to human MIX23 (mitochondrial matrix import factor 23). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 125.2), Liver (RPKM 114.8) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Mix23 in Genome Data Viewer
    Location:
    11q22
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (78166038..78186323, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (64660711..64681000, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (67598419..67618704, complement)

    Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481076 Neighboring gene ribosomal protein S2, pseudogene 8 Neighboring gene RAN binding protein 1 like 1 Neighboring gene family with sequence similarity 162, member A Neighboring gene WD repeat domain 5B Neighboring gene karyopherin subunit alpha 1 Neighboring gene uncharacterized LOC134481077

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in mitochondrial intermembrane space  
    is_active_in mitochondrion  
    located_in mitochondrion PubMed 

    General protein information

    Preferred Names
    protein MIX23
    Names
    coiled-coil domain containing 58
    coiled-coil domain-containing protein 58

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105875.1NP_001099345.1  protein MIX23

      See identical proteins and their annotated locations for NP_001099345.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473967
      UniProtKB/TrEMBL
      A6IRD9, A6IRE0, D4A305
      Related
      ENSRNOP00000047028.3, ENSRNOT00000042208.5
      Conserved Domains (1) summary
      pfam09774
      Location:10134
      Cid2; Caffeine-induced death protein 2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086029.1 Reference GRCr8

      Range
      78166038..78186323 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063270378.1XP_063126448.1  protein MIX23 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZWL7, A6IRE0
      Related
      ENSRNOP00000082309.1, ENSRNOT00000095212.2
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