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    Jsrp1 junctional sarcoplasmic reticulum protein 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 690423, updated on 9-Dec-2024

    Summary

    Official Symbol
    Jsrp1provided by RGD
    Official Full Name
    junctional sarcoplasmic reticulum protein 1provided by RGD
    Primary source
    RGD:1596084
    See related
    EnsemblRapid:ENSRNOG00000032951 AllianceGenome:RGD:1596084
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in skeletal muscle contraction. Predicted to act upstream of or within protein localization to membrane and regulation of ryanodine-sensitive calcium-release channel activity. Predicted to be active in sarcoplasmic reticulum. Orthologous to human JSRP1 (junctional sarcoplasmic reticulum protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 1006.4) See more
    Orthologs
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    Genomic context

    See Jsrp1 in Genome Data Viewer
    Location:
    7q11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (9539997..9556730)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (8889486..8906055)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (11769950..11774373)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat and Ig domain containing 3 Neighboring gene ornithine decarboxylase antizyme 1 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene anti-Mullerian hormone Neighboring gene splicing factor 3A subunit 2 Neighboring gene pleckstrin homology domain containing J1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in sarcoplasmic reticulum  
    located_in sarcoplasmic reticulum  

    General protein information

    Preferred Names
    junctional sarcoplasmic reticulum protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109591.1NP_001103061.1  junctional sarcoplasmic reticulum protein 1

      See identical proteins and their annotated locations for NP_001103061.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474029
      UniProtKB/TrEMBL
      A6K8F7, D4A2V6
      Related
      ENSRNOP00000047240.5, ENSRNOT00000044417.6
      Conserved Domains (2) summary
      PRK12678
      Location:159338
      PRK12678; transcription termination factor Rho; Provisional
      pfam15312
      Location:113166
      JSRP; Junctional sarcoplasmic reticulum protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      9539997..9556730
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039079925.2XP_038935853.1  junctional sarcoplasmic reticulum protein 1 isoform X1

      UniProtKB/TrEMBL
      A6K8F7, D4A2V6
      Conserved Domains (2) summary
      PRK12678
      Location:159338
      PRK12678; transcription termination factor Rho; Provisional
      pfam15312
      Location:113166
      JSRP; Junctional sarcoplasmic reticulum protein
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