U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Cyp4f17 cytochrome P450, family 4, subfamily f, polypeptide 17 [ Mus musculus (house mouse) ]

    Gene ID: 208285, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Cyp4f17provided by MGI
    Official Full Name
    cytochrome P450, family 4, subfamily f, polypeptide 17provided by MGI
    Primary source
    MGI:MGI:3646233
    See related
    Ensembl:ENSMUSG00000091586 AllianceGenome:MGI:3646233
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG208285
    Expression
    Ubiquitous expression in subcutaneous fat pad adult (RPKM 8.0), ovary adult (RPKM 6.3) and 26 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Cyp4f17 in Genome Data Viewer
    Location:
    17 B1; 17 17.59 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (32725404..32749132)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (32506192..32530158)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 41569 Neighboring gene peptidoglycan recognition protein 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:32561046-32561233 Neighboring gene cytochrome P450, family 4, subfamily f, polypeptide 39 Neighboring gene STARR-seq mESC enhancer starr_42380 Neighboring gene STARR-seq mESC enhancer starr_42381 Neighboring gene STARR-seq mESC enhancer starr_42382 Neighboring gene STARR-seq mESC enhancer starr_42383 Neighboring gene STARR-positive B cell enhancer ABC_E8998 Neighboring gene STARR-seq mESC enhancer starr_42384 Neighboring gene cytochrome P450, family 4, subfamily f, polypeptide 16 Neighboring gene STARR-seq mESC enhancer starr_42386 Neighboring gene predicted gene, 41570

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    cytochrome P450, family 4, subfamily f, polypeptide 17

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101445.2 → NP_001094915.1  cytochrome P450, family 4, subfamily f, polypeptide 17 isoform 1 precursor

      See identical proteins and their annotated locations for NP_001094915.1

      Status: VALIDATED

      Source sequence(s)
      CT485616
      Consensus CDS
      CCDS50059.1
      UniProtKB/TrEMBL
      G3UW78
      Related
      ENSMUSP00000129514.2, ENSMUST00000165999.2
      Conserved Domains (1) summary
      pfam00067
      Location:52 → 515
      p450; Cytochrome P450

    2. NM_001410355.1 → NP_001397284.1  cytochrome P450, family 4, subfamily f, polypeptide 17 isoform 3 precursor

      Status: VALIDATED

      Source sequence(s)
      CT485616

    3. NM_001410356.1 → NP_001397285.1  cytochrome P450, family 4, subfamily f, polypeptide 17 isoform 3 precursor

      Status: VALIDATED

      Source sequence(s)
      CT485616

    4. NM_001410357.1 → NP_001397286.1  cytochrome P450, family 4, subfamily f, polypeptide 17 isoform 4

      Status: VALIDATED

      Source sequence(s)
      CT485616

    5. NM_001410358.1 → NP_001397287.1  cytochrome P450, family 4, subfamily f, polypeptide 17 isoform 5 precursor

      Status: VALIDATED

      Source sequence(s)
      CT485616

    6. NM_001410359.1 → NP_001397288.1  cytochrome P450, family 4, subfamily f, polypeptide 17 isoform 6 precursor

      Status: VALIDATED

      Source sequence(s)
      CT485616

    7. NM_001410360.1 → NP_001397289.1  cytochrome P450, family 4, subfamily f, polypeptide 17 isoform 2 precursor

      Status: VALIDATED

      Source sequence(s)
      CT485616

    RNA

    1. NR_177062.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CT485616

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      32725404..32749132
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011246339.2 → XP_011244641.1  cytochrome P450, family 4, subfamily f, polypeptide 17 isoform X6

      Conserved Domains (1) summary
      pfam00067
      Location:3 → 394
      p450; Cytochrome P450

    2. XM_006523959.4 → XP_006524022.1  cytochrome P450, family 4, subfamily f, polypeptide 17 isoform X1

      See identical proteins and their annotated locations for XP_006524022.1

      UniProtKB/TrEMBL
      G3UW78
      Conserved Domains (1) summary
      pfam00067
      Location:52 → 515
      p450; Cytochrome P450
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools