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    Ppp1cb-ps7 protein phosphatase 1 catalytic subunit beta, pseudogene 7 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 316717, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Ppp1cb-ps7provided by RGD
    Official Full Name
    protein phosphatase 1 catalytic subunit beta, pseudogene 7provided by RGD
    Primary source
    RGD:1560460
    See related
    AllianceGenome:RGD:1560460
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Muscle (RPKM 188.9), Heart (RPKM 126.0) and 9 other tissues See more
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    Genomic context

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    See Ppp1cb-ps7 in Genome Data Viewer
    Location:
    6q11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (7145544..7148521)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (1391888..1394865)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (18088942..18090200, complement)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene crooked neck pre-mRNA splicing factor 1, pseudogene 1 Neighboring gene small nucleolar RNA U3 Neighboring gene UDP-N-acteylglucosamine pyrophosphorylase 1-like 2 Neighboring gene WW domain containing adaptor with coiled-coil, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Activation of serine/threonine protein phosphatase-1 is required for ceramide-induced survival of sympathetic neurons. Plummer G, et al. Biochem J, 2005 Feb 1. PMID 15361069, Free PMC Article
    2. Multiplicity of protein serine-threonine phosphatases in PC12 pheochromocytoma and FTO-2B hepatoma cells. Wadzinski BE, et al. J Biol Chem, 1990 Dec 15. PMID 2174876

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • protein serine-threonine phosphatase catalytic subunit PP-1c pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_079362.1 

      Range
      101..3078
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      7145544..7148521
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.