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    Ogfod2 2-oxoglutarate and iron-dependent oxygenase domain containing 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 288657, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ogfod2provided by RGD
    Official Full Name
    2-oxoglutarate and iron-dependent oxygenase domain containing 2provided by RGD
    Primary source
    RGD:1310594
    See related
    EnsemblRapid:ENSRNOG00000001081 AllianceGenome:RGD:1310594
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310594
    Summary
    Orthologous to human OGFOD2 (2-oxoglutarate and iron dependent oxygenase domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 47.3), Lung (RPKM 31.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ogfod2 in Genome Data Viewer
    Location:
    12q15
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (38143329..38146630, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (32482386..32485688, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (37907130..37910446, complement)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol transfer protein, membrane-associated 2 Neighboring gene uncharacterized LOC134481294 Neighboring gene U6 spliceosomal RNA Neighboring gene ARF like GTPase 6 interacting protein 4 Neighboring gene ATP binding cassette subfamily B member 9 Neighboring gene uncharacterized LOC102552690

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of calcium- and nitric oxide-regulated genes by differential analysis of library expression (DAzLE). Li H, et al. Proc Natl Acad Sci U S A, 2004 Jan 13. PMID 14701905, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2
    NP_001099397.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105927.2 → NP_001099397.1  2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2

      See identical proteins and their annotated locations for NP_001099397.1

      Status: VALIDATED

      Source sequence(s)
      AI578257, CD567922, JAXUCZ010000012
      UniProtKB/TrEMBL
      A6J116
      Related
      ENSRNOP00000107188.1, ENSRNOT00000001433.7
      Conserved Domains (1) summary
      smart00702
      Location:145 → 307
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      38143329..38146630 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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