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    Dnajc21 DnaJ heat shock protein family (Hsp40) member C21 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 192210, updated on 9-Dec-2024

    Summary

    Official Symbol
    Dnajc21provided by RGD
    Official Full Name
    DnaJ heat shock protein family (Hsp40) member C21provided by RGD
    Primary source
    RGD:621729
    See related
    EnsemblRapid:ENSRNOG00000017876 AllianceGenome:RGD:621729
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Dnaja5
    Summary
    Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be located in cytosol and nucleolus. Predicted to be active in cytoplasm. Orthologous to human DNAJC21 (DnaJ heat shock protein family (Hsp40) member C21). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Muscle (RPKM 186.2), Testes (RPKM 95.6) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Dnajc21 in Genome Data Viewer
    Location:
    2q16
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (61146669..61173908, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (59419507..59446746, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (60419446..60446656, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene prolactin receptor Neighboring gene alanine-glyoxylate aminotransferase 2 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene biogenesis of ribosomes BRX1 Neighboring gene RAD1 checkpoint DNA exonuclease

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables nucleic acid binding  
    enables zinc ion binding  
    Component Evidence Code Pubs
    is_active_in cytoplasm  
    located_in cytosol  
    located_in cytosol  
    located_in nucleolus  
    located_in nucleolus  
    located_in nucleus  

    General protein information

    Preferred Names
    dnaJ homolog subfamily C member 21
    Names
    DnaJ (Hsp40) homolog, subfamily C, member 21
    DnaJ homology subfamily A member 5
    putative regulation protein GS3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_138856.3NP_620211.3  dnaJ homolog subfamily C member 21

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      A0A0G2QC19, A0A8I6GBG8
      Related
      ENSRNOP00000024218.7, ENSRNOT00000024218.8

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      61146669..61173908 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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