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    Ccdc159 coiled-coil domain containing 159 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 300442, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ccdc159provided by RGD
    Official Full Name
    coiled-coil domain containing 159provided by RGD
    Primary source
    RGD:1308031
    See related
    EnsemblRapid:ENSRNOG00000011799 AllianceGenome:RGD:1308031
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308031
    Summary
    Predicted to be involved in spermatid development. Predicted to be located in sperm head-tail coupling apparatus. Orthologous to human CCDC159 (coiled-coil domain containing 159). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 83.2), Adrenal (RPKM 36.6) and 9 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Ccdc159 in Genome Data Viewer
    Location:
    8q13
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (28733988..28742646)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (20457905..20467232)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (22937962..22946648)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene RAB3D, member RAS oncogene family Neighboring gene transmembrane protein 205 Neighboring gene phospholipid phosphatase related 2 Neighboring gene SWIM-type zinc finger 7 associated protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Clone Names

    • MGC109537

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in spermatid development  
    involved_in spermatid development  
    Component Evidence Code Pubs
    located_in sperm head-tail coupling apparatus  
    located_in sperm head-tail coupling apparatus  

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 159

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001371565.1 → NP_001358494.1  coiled-coil domain-containing protein 159

      Status: VALIDATED

      Source sequence(s)
      BC088314, JAXUCZ010000008
      UniProtKB/TrEMBL
      A0A0G2JTP2, A6JNW0
      Related
      ENSRNOP00000068788.3, ENSRNOT00000088255.3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      28733988..28742646
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006242678.5 → XP_006242740.1  coiled-coil domain-containing protein 159 isoform X1

      See identical proteins and their annotated locations for XP_006242740.1

      Conserved Domains (1) summary
      COG0419
      Location:146 → 313
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    2. XM_006242680.5 → XP_006242742.1  coiled-coil domain-containing protein 159 isoform X3

      See identical proteins and their annotated locations for XP_006242742.1

      UniProtKB/TrEMBL
      F7FD89
      Conserved Domains (1) summary
      COG0419
      Location:136 → 303
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    3. XM_063265048.1 → XP_063121118.1  coiled-coil domain-containing protein 159 isoform X6

    4. XM_006242679.5 → XP_006242741.1  coiled-coil domain-containing protein 159 isoform X2

      See identical proteins and their annotated locations for XP_006242741.1

      Related
      ENSRNOP00000040215.5, ENSRNOT00000049993.5
      Conserved Domains (1) summary
      COG0419
      Location:145 → 312
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    5. XM_063265047.1 → XP_063121117.1  coiled-coil domain-containing protein 159 isoform X5

      Related
      ENSRNOP00000104118.1, ENSRNOT00000159553.1
    6. XM_006242681.5 → XP_006242743.1  coiled-coil domain-containing protein 159 isoform X4

      See identical proteins and their annotated locations for XP_006242743.1

      Conserved Domains (1) summary
      COG0419
      Location:135 → 302
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    7. XM_063265049.1 → XP_063121119.1  coiled-coil domain-containing protein 159 isoform X7

      Related
      ENSRNOP00000101495.1, ENSRNOT00000153865.1
    8. XM_063265051.1 → XP_063121121.1  coiled-coil domain-containing protein 159 isoform X12

      UniProtKB/TrEMBL
      A0A8I6A3K5
      Related
      ENSRNOP00000087027.1, ENSRNOT00000120153.2
    9. XM_039081007.2 → XP_038936935.1  coiled-coil domain-containing protein 159 isoform X10

    10. XM_063265050.1 → XP_063121120.1  coiled-coil domain-containing protein 159 isoform X11

    11. XM_006242686.5 → XP_006242748.1  coiled-coil domain-containing protein 159 isoform X9

      See identical proteins and their annotated locations for XP_006242748.1

    12. XM_039081006.2 → XP_038936934.1  coiled-coil domain-containing protein 159 isoform X8

    13. XM_039081005.2 → XP_038936933.1  coiled-coil domain-containing protein 159 isoform X8

    14. XM_063265052.1 → XP_063121122.1  coiled-coil domain-containing protein 159 isoform X13

      UniProtKB/TrEMBL
      Q5M816

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