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    Tigd2 tigger transposable element derived 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100912924, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tigd2provided by RGD
    Official Full Name
    tigger transposable element derived 2provided by RGD
    Primary source
    RGD:1559612
    See related
    EnsemblRapid:ENSRNOG00000038449 AllianceGenome:RGD:1559612
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1559612
    Summary
    Predicted to enable DNA binding activity. Predicted to be active in nucleus. Orthologous to human TIGD2 (tigger transposable element derived 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Spleen (RPKM 64.3), Thymus (RPKM 59.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tigd2 in Genome Data Viewer
    Location:
    4q24
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (89744516..89747608)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (88414366..88417458)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (89535418..89538535)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 13, member A Neighboring gene small nucleolar RNA SNORA17 Neighboring gene acyl-CoA binding domain containing 5, pseudogene 1 Neighboring gene sentrin-specific protease 6-like Neighboring gene SUMO specific peptidase 6, pseudogene 1 Neighboring gene GPRIN family member 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    tigger transposable element-derived protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001305180.1 → NP_001292109.1  tigger transposable element-derived protein 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      F1LVC4
      Related
      ENSRNOP00000055379.3, ENSRNOT00000058581.5
      Conserved Domains (3) summary
      pfam03184
      Location:207 → 385
      DDE_1; DDE superfamily endonuclease
      pfam03221
      Location:76 → 135
      HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain
      cl21459
      Location:4 → 52
      HTH; Helix-turn-helix domains

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      89744516..89747608
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.