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    Tg thyroglobulin [ Rattus norvegicus (Norway rat) ]

    Gene ID: 24826, updated on 9-Dec-2024

    Summary

    Symbol
    Tgprovided by RGD
    Full Name
    thyroglobulinprovided by RGD
    Primary source
    RGD:3848
    See related
    EnsemblRapid:ENSRNOG00000082126 AllianceGenome:RGD:3848
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Tgn
    Summary
    Enables several functions, including anion binding activity; identical protein binding activity; and protein-folding chaperone binding activity. Involved in several processes, including cellular response to genistein; response to lipopolysaccharide; and thyroid hormone generation. Located in extracellular space and perinuclear region of cytoplasm. Part of protein-containing complex. Used to study hypothyroidism and isolated growth hormone deficiency. Human ortholog(s) of this gene implicated in autoimmune disease of endocrine system (multiple); goiter; liver disease (multiple); and thyroid dyshormonogenesis 3. Orthologous to human TG (thyroglobulin). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 16.1), Kidney (RPKM 5.4) and 6 other tissues See more
    Orthologs
    NEW
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    Genomic context

    Location:
    7q33
    Exon count:
    49
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (100307349..100492246)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (98418293..98603210)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (107467260..107652897)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene PHD finger protein 20-like 1 Neighboring gene U2 spliceosomal RNA Neighboring gene src-like adaptor Neighboring gene cellular communication network factor 4 Neighboring gene N-myc downstream regulated 1

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables anion binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables hormone activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein-containing complex binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein-folding chaperone binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables signaling receptor binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to genistein IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in hormone biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in iodide transport IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within iodide transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of myelination IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within regulation of myelination ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to lipopolysaccharide IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in response to pH IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in thyroid gland development IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in thyroid gland development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in thyroid hormone generation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in thyroid hormone generation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in thyroid hormone generation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in thyroid hormone generation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in thyroid hormone generation TAS
    Traceable Author Statement
    more info
    PubMed 
    acts_upstream_of_or_within thyroid hormone metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in transcytosis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular space IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extracellular space TAS
    Traceable Author Statement
    more info
    PubMed 
    located_in perinuclear region of cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of protein-containing complex IDA
    Inferred from Direct Assay
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001270783.1NP_001257712.1  thyroglobulin isoform 2 precursor

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
      Source sequence(s)
      JAXUCZ010000007
      UniProtKB/TrEMBL
      A0A0G2JXY8, G5ENA7
      Conserved Domains (5) summary
      smart00211
      Location:14711518
      TY; Thyroglobulin type I repeats
      cd00191
      Location:96161
      TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
      pfam00135
      Location:21502671
      COesterase; Carboxylesterase family
      pfam07699
      Location:14161461
      GCC2_GCC3; GCC2 and GCC3
      cl00150
      Location:682728
      TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
    2. NM_001270784.1NP_001257713.1  thyroglobulin isoform 3 precursor

      See identical proteins and their annotated locations for NP_001257713.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) consists of only the first five exons plus an alternate 3' exon compared to variant 1. The resulting isoform (3) has a much shorter and distinct C-terminus compared to isoform 1. This variant has been described in PMID:2325666.
      Source sequence(s)
      JAXUCZ010000007
      UniProtKB/TrEMBL
      A0A8I6AAP3, A6HRR7
      Related
      ENSRNOP00000089860.1, ENSRNOT00000083264.4
      Conserved Domains (1) summary
      cd00191
      Location:96161
      TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
    3. NM_030988.2NP_112250.2  thyroglobulin isoform 1 precursor

      See identical proteins and their annotated locations for NP_112250.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
      Source sequence(s)
      JAXUCZ010000007
      UniProtKB/Swiss-Prot
      P06882, Q9JKY6, Q9JM94
      UniProtKB/TrEMBL
      A6HRR6, G3V6V3
      Conserved Domains (5) summary
      smart00211
      Location:15191566
      TY; Thyroglobulin type I repeats
      cd00191
      Location:96161
      TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
      pfam00135
      Location:21982719
      COesterase; Carboxylesterase family
      pfam07699
      Location:14641509
      GCC2_GCC3; GCC2 and GCC3
      cl00150
      Location:164249
      TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      100307349..100492246
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)