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    Kiaa1671 KIAA1671 homolog [ Rattus norvegicus (Norway rat) ]

    Gene ID: 288744, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Kiaa1671provided by RGD
    Official Full Name
    KIAA1671 homologprovided by RGD
    Primary source
    RGD:1306556
    See related
    EnsemblRapid:ENSRNOG00000052424 AllianceGenome:RGD:1306556
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306556; RGD1560125
    Summary
    Orthologous to human KIAA1671 (KIAA1671). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 65.1), Adrenal (RPKM 57.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Kiaa1671 in Genome Data Viewer
    Location:
    12q16
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (49069929..49212604)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (43409479..43552152)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (49418026..49561038)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108352470 Neighboring gene uncharacterized LOC134481210 Neighboring gene LHFPL tetraspan subfamily member 7 Neighboring gene uncharacterized LOC102552141 Neighboring gene crystallin, beta B3 Neighboring gene crystallin, beta B2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein KIAA1671 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402472.1 → NP_001389401.1  uncharacterized protein KIAA1671 homolog

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000012
      UniProtKB/TrEMBL
      A0A0G2JZ88
      Related
      ENSRNOP00000070952.1, ENSRNOT00000082998.3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      49069929..49212604
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017598547.3 → XP_017454036.1  uncharacterized protein KIAA1671 homolog isoform X1

      UniProtKB/TrEMBL
      A0A0G2JZ88
      Conserved Domains (2) summary
      PTZ00449
      Location:166 → 440
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      pfam15327
      Location:1596 → 1761
      Tankyrase_bdg_C; Tankyrase binding protein C terminal domain

    2. XM_039090200.2 → XP_038946128.1  uncharacterized protein KIAA1671 homolog isoform X1

      UniProtKB/TrEMBL
      A0A0G2JZ88
      Conserved Domains (2) summary
      PTZ00449
      Location:166 → 440
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      pfam15327
      Location:1596 → 1761
      Tankyrase_bdg_C; Tankyrase binding protein C terminal domain

    3. XM_063271226.1 → XP_063127296.1  uncharacterized protein KIAA1671 homolog isoform X1

      UniProtKB/TrEMBL
      A0A0G2JZ88

    4. XM_006249576.4 → XP_006249638.1  uncharacterized protein KIAA1671 homolog isoform X3

      See identical proteins and their annotated locations for XP_006249638.1

      UniProtKB/TrEMBL
      A0A8I6AJY8
      Related
      ENSRNOP00000094014.1, ENSRNOT00000095507.2
      Conserved Domains (1) summary
      pfam15327
      Location:134 → 300
      Tankyrase_bdg_C; Tankyrase binding protein C terminal domain

    5. XM_006249575.5 → XP_006249637.1  uncharacterized protein KIAA1671 homolog isoform X2

      See identical proteins and their annotated locations for XP_006249637.1

      UniProtKB/TrEMBL
      A0A8I6AS67
      Related
      ENSRNOP00000097170.1, ENSRNOT00000119382.2
      Conserved Domains (1) summary
      pfam15327
      Location:212 → 377
      Tankyrase_bdg_C; Tankyrase binding protein C terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

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