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    Gjb1 gap junction protein, beta 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 29584, updated on 9-Dec-2024

    Summary

    Official Symbol
    Gjb1provided by RGD
    Official Full Name
    gap junction protein, beta 1provided by RGD
    Primary source
    RGD:61926
    See related
    EnsemblRapid:ENSRNOG00000063213 AllianceGenome:RGD:61926
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Cx32; Cxng
    Summary
    Enables gap junction channel activity. Involved in epididymis development and purine ribonucleotide transport. Located in gap junction and lateral plasma membrane. Part of protein-containing complex. Biomarker of autoimmune thyroiditis and extrahepatic cholestasis. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease X-linked dominant 1. Orthologous to human GJB1 (gap junction protein beta 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Liver (RPKM 1096.1) and Kidney (RPKM 93.4) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Gjb1 in Genome Data Viewer
    Location:
    Xq22
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (70541845..70549776)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (66501848..66509783)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (71272030..71279973)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene mediator complex subunit 12 Neighboring gene neuroligin 3 Neighboring gene zinc finger MYM-type containing 3 Neighboring gene non-POU domain containing, octamer-binding

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables gap junction channel activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables gap junction channel activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in cell communication IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cell-cell signaling IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in epididymis development IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in purine ribonucleotide transport IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of connexin complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of connexin complex IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in gap junction IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in gap junction ISO
    Inferred from Sequence Orthology
    more info
     
    located_in lateral plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    part_of protein-containing complex IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    gap junction beta-1 protein
    Names
    GAP junction 28 kDa liver protein
    connexin g
    connexin-32
    gap junction membrane channel protein beta 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_017251.2NP_058947.1  gap junction beta-1 protein

      See identical proteins and their annotated locations for NP_058947.1

      Status: VALIDATED

      Source sequence(s)
      BC078868, CK476084
      UniProtKB/Swiss-Prot
      P08033
      UniProtKB/TrEMBL
      A0A654IET2
      Related
      ENSRNOP00000083358.1, ENSRNOT00000095443.2
      Conserved Domains (1) summary
      pfam00029
      Location:2214
      Connexin

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      70541845..70549776
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017601945.3XP_017457434.1  gap junction beta-1 protein isoform X1

      UniProtKB/Swiss-Prot
      P08033
      UniProtKB/TrEMBL
      A0A654IET2
      Related
      ENSRNOP00000106366.1, ENSRNOT00000124478.1
      Conserved Domains (1) summary
      pfam00029
      Location:2214
      Connexin
    2. XM_008773255.4XP_008771477.1  gap junction beta-1 protein isoform X1

      See identical proteins and their annotated locations for XP_008771477.1

      UniProtKB/Swiss-Prot
      P08033
      UniProtKB/TrEMBL
      A0A654IET2
      Related
      ENSRNOP00000102254.1, ENSRNOT00000172093.1
      Conserved Domains (1) summary
      pfam00029
      Location:2214
      Connexin