Tcam1 testicular cell adhesion molecule 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Tcam1provided by RGD
Official Full Name: testicular cell adhesion molecule 1provided by RGD
Primary source: RGD:69435
See related: EnsemblRapid:ENSRNOG00000010929 AllianceGenome:RGD:69435
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Tcam1p
Summary: Predicted to enable integrin binding activity. Predicted to be involved in cell adhesion. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Testes (RPKM 59.2), Heart (RPKM 9.7) and 1 other tissue See more
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Genomic context

Location:: 10q32.1

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	10	NC_086028.1 (91708258..91720269)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	10	NC_051345.1 (91208470..91220484)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	10	NC_005109.4 (94466351..94478591)

Chromosome 10 - NC_086028.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH144253 (e-PCR)
- UniSTS:233498

D10Wox47 (e-PCR)
- UniSTS:518508

Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in cell-cell adhesion	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: testicular cell adhesion molecule 1

Names: testicular cell adhesion molecule 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_021673.2 → NP_067705.1 testicular cell adhesion molecule 1 precursor

See identical proteins and their annotated locations for NP_067705.1

Status: VALIDATED

Source sequence(s)

JAXUCZ010000010

UniProtKB/TrEMBL

A6HK25, F7FLV4, Q9Z133

Related

ENSRNOP00000014867.2, ENSRNOT00000014867.6

Conserved Domains (3) summary

smart00410
Location:408 → 477

IG_like; Immunoglobulin like

pfam03921
Location:25 → 107

ICAM_N; Intercellular adhesion molecule (ICAM), N-terminal domain

cl11960
Location:110 → 209

Ig; Immunoglobulin domain