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    Pla2g6 phospholipase A2 group VI [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360426, updated on 9-Dec-2024

    Summary

    Official Symbol
    Pla2g6provided by RGD
    Official Full Name
    phospholipase A2 group VIprovided by RGD
    Primary source
    RGD:628867
    See related
    EnsemblRapid:ENSRNOG00000012295 AllianceGenome:RGD:628867
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    iPla2; PNPLA9; GVI PLA2; caI-PLA2; iPLA2-beta
    Summary
    Enables several functions, including ATP-dependent protein binding activity; calcium-independent phospholipase A2 activity; and long-chain fatty acyl-CoA hydrolase activity. Involved in several processes, including cardiolipin acyl-chain remodeling; positive regulation of protein kinase C signaling; and positive regulation of secretion. Predicted to be located in several cellular components, including extracellular space; microtubule cytoskeleton; and nuclear speck. Predicted to be active in mitochondrion. Biomarker of pleurisy. Human ortholog(s) of this gene implicated in dystonia 12; neuroaxonal dystrophy; and neurodegenerative disease (multiple). Orthologous to human PLA2G6 (phospholipase A2 group VI). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 165.3), Kidney (RPKM 64.1) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Pla2g6 in Genome Data Viewer
    Location:
    7q34
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (112731803..112771978, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (110851378..110891557, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (120519479..120559716, complement)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 16 member 8 Neighboring gene BAR/IMD domain containing adaptor protein 2 like 2 Neighboring gene MAF bZIP transcription factor F Neighboring gene transmembrane protein 184B

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    General gene information

    Markers

    Clone Names

    • MGC93880

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables 1-alkyl-2-acetylglycerophosphocholine esterase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables ATP-dependent protein binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables calcium-dependent phospholipase A2 activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables calcium-independent phospholipase A2 activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables calcium-independent phospholipase A2 activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables calcium-independent phospholipase A2 activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables calcium-independent phospholipase A2 activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables long-chain fatty acyl-CoA hydrolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables long-chain fatty acyl-CoA hydrolase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables long-chain fatty acyl-CoA hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables long-chain fatty acyl-CoA hydrolase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables long-chain fatty acyl-CoA hydrolase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables lysophospholipase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables lysophospholipase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables lysophospholipase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables phospholipase A2 activity TAS
    Traceable Author Statement
    more info
     
    enables protein kinase binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables serine hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables serine hydrolase activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in antibacterial humoral response IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in antibacterial humoral response ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cardiolipin acyl-chain remodeling IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in cardiolipin acyl-chain remodeling IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in cardiolipin acyl-chain remodeling IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cardiolipin acyl-chain remodeling ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cardiolipin acyl-chain remodeling ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in cardiolipin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cardiolipin biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in chemotaxis IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in lipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in maternal process involved in female pregnancy IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in memory IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of synaptic transmission, glutamatergic IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in phosphatidic acid metabolic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in phosphatidylcholine catabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in phosphatidylcholine catabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in phosphatidylcholine catabolic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in phosphatidylethanolamine catabolic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in platelet activating factor metabolic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of arachidonate secretion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of arachidonate secretion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of ceramide biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in positive regulation of ceramide biosynthetic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of cytosolic calcium ion concentration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of exocytosis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of insulin secretion involved in cellular response to glucose stimulus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of insulin secretion involved in cellular response to glucose stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of insulin secretion involved in cellular response to glucose stimulus ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of intracellular signal transduction IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of protein phosphorylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of release of cytochrome c from mitochondria IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in regulation of store-operated calcium channel activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in response to endoplasmic reticulum stress IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in urinary bladder smooth muscle contraction IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in vasodilation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    located_in microtubule cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    located_in microtubule cytoskeleton ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrial inner membrane TAS
    Traceable Author Statement
    more info
     
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nuclear speck IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nuclear speck ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in pseudopodium IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    85/88 kDa calcium-independent phospholipase A2
    Names
    2-lysophosphatidylcholine acylhydrolase
    85 kDa calcium-independent phospholipase A2
    intracellular membrane-associated calcium-independent phospholipase A2 beta
    palmitoyl-CoA hydrolase
    patatin-like phospholipase domain-containing protein 9
    phospholipase A2, group VI (cytosolic, calcium-independent)
    NP_001005560.1
    NP_001257725.1
    XP_006242059.1
    XP_006242060.1
    XP_006242061.1
    XP_006242064.1
    XP_006242065.1
    XP_006242066.1
    XP_006242067.1
    XP_008763979.1
    XP_038935290.1
    XP_038935291.1
    XP_063119763.1
    XP_063119764.1
    XP_063119765.1
    XP_063119766.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001005560.1NP_001005560.1  85/88 kDa calcium-independent phospholipase A2 isoform 1

      See identical proteins and their annotated locations for NP_001005560.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      BC081916
      UniProtKB/Swiss-Prot
      G3V7M8, P97570, Q66HD1
      UniProtKB/TrEMBL
      A0A8L2R578
      Related
      ENSRNOP00000072104.2, ENSRNOT00000087344.3
      Conserved Domains (5) summary
      cd07212
      Location:481794
      Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
      COG0666
      Location:345419
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:286314
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:156249
      Ank_2; Ankyrin repeats (3 copies)
      cl39094
      Location:103183
      Ank_2; Ankyrin repeats (3 copies)
    2. NM_001270796.1NP_001257725.1  85/88 kDa calcium-independent phospholipase A2 isoform 2

      See identical proteins and their annotated locations for NP_001257725.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
      Source sequence(s)
      BC081916, JAXUCZ010000007
      UniProtKB/TrEMBL
      A0A8L2R578
      Related
      ENSRNOP00000108803.1, ENSRNOT00000121906.1
      Conserved Domains (4) summary
      cd07212
      Location:426739
      Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
      cd00204
      Location:214370
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:291380
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:286314
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      112731803..112771978 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006242002.1XP_006242064.1  85/88 kDa calcium-independent phospholipase A2 isoform X4

      See identical proteins and their annotated locations for XP_006242064.1

      UniProtKB/TrEMBL
      A0A8L2R578
      Conserved Domains (5) summary
      cd07212
      Location:505818
      Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
      COG0666
      Location:345419
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd00204
      Location:214370
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:291380
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:286314
      ANK; ANK repeat [structural motif]
    2. XM_006242003.1XP_006242065.1  85/88 kDa calcium-independent phospholipase A2 isoform X4

      See identical proteins and their annotated locations for XP_006242065.1

      UniProtKB/TrEMBL
      A0A8L2R578
      Conserved Domains (5) summary
      cd07212
      Location:505818
      Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
      COG0666
      Location:345419
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd00204
      Location:214370
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:291380
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:286314
      ANK; ANK repeat [structural motif]
    3. XM_006242004.3XP_006242066.1  85/88 kDa calcium-independent phospholipase A2 isoform X4

      See identical proteins and their annotated locations for XP_006242066.1

      UniProtKB/TrEMBL
      A0A8L2R578
      Conserved Domains (5) summary
      cd07212
      Location:505818
      Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
      COG0666
      Location:345419
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd00204
      Location:214370
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:291380
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:286314
      ANK; ANK repeat [structural motif]
    4. XM_063263695.1XP_063119765.1  85/88 kDa calcium-independent phospholipase A2 isoform X9

      UniProtKB/Swiss-Prot
      G3V7M8, P97570, Q66HD1
      UniProtKB/TrEMBL
      A0A8L2R578
    5. XM_063263694.1XP_063119764.1  85/88 kDa calcium-independent phospholipase A2 isoform X8

      UniProtKB/TrEMBL
      A0A8L2Q8C9, A0A8L2R578
      Related
      ENSRNOP00000016827.6, ENSRNOT00000016827.8
    6. XM_063263693.1XP_063119763.1  85/88 kDa calcium-independent phospholipase A2 isoform X6

      UniProtKB/TrEMBL
      A0A8L2R578
    7. XM_006241998.5XP_006242060.1  85/88 kDa calcium-independent phospholipase A2 isoform X2

      See identical proteins and their annotated locations for XP_006242060.1

      UniProtKB/TrEMBL
      A0A8L2R578
      Conserved Domains (5) summary
      cd07212
      Location:523836
      Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
      COG0666
      Location:363437
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd00204
      Location:232388
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:309398
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:304332
      ANK; ANK repeat [structural motif]
    8. XM_008765757.4XP_008763979.1  85/88 kDa calcium-independent phospholipase A2 isoform X5

      UniProtKB/TrEMBL
      A0A8L2R578
      Conserved Domains (4) summary
      cd07212
      Location:487800
      Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
      cd00204
      Location:251407
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:328417
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:323351
      ANK; ANK repeat [structural motif]
    9. XM_006241997.5XP_006242059.1  85/88 kDa calcium-independent phospholipase A2 isoform X1

      UniProtKB/TrEMBL
      A0A8L2R578
      Related
      ENSRNOP00000100746.1, ENSRNOT00000153317.1
      Conserved Domains (5) summary
      cd07212
      Location:542855
      Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
      COG0666
      Location:382456
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd00204
      Location:251407
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:328417
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:323351
      ANK; ANK repeat [structural motif]
    10. XM_006242005.5XP_006242067.1  85/88 kDa calcium-independent phospholipase A2 isoform X7

      UniProtKB/TrEMBL
      A0A8L2R578
      Conserved Domains (4) summary
      cd07212
      Location:463776
      Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
      cd00204
      Location:251407
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:328417
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:323351
      ANK; ANK repeat [structural motif]
    11. XM_006241999.5XP_006242061.1  85/88 kDa calcium-independent phospholipase A2 isoform X3

      UniProtKB/TrEMBL
      A0A8L2Q8G5, A0A8L2R578
      Related
      ENSRNOP00000017104.5, ENSRNOT00000017108.7
      Conserved Domains (5) summary
      cd07212
      Location:518831
      Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
      COG0666
      Location:382456
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd00204
      Location:251407
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:328417
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:323351
      ANK; ANK repeat [structural motif]
    12. XM_039079363.2XP_038935291.1  85/88 kDa calcium-independent phospholipase A2 isoform X11

      Conserved Domains (4) summary
      PLN03192
      Location:324509
      PLN03192; Voltage-dependent potassium channel; Provisional
      sd00045
      Location:323351
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:193286
      Ank_2; Ankyrin repeats (3 copies)
      cl39094
      Location:140220
      Ank_2; Ankyrin repeats (3 copies)
    13. XM_039079362.2XP_038935290.1  85/88 kDa calcium-independent phospholipase A2 isoform X10

      Conserved Domains (4) summary
      COG0666
      Location:382456
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:323351
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:193286
      Ank_2; Ankyrin repeats (3 copies)
      cl39094
      Location:140220
      Ank_2; Ankyrin repeats (3 copies)
    14. XM_063263696.1XP_063119766.1  85/88 kDa calcium-independent phospholipase A2 isoform X11

    RNA

    1. XR_005486652.2 RNA Sequence