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    Foxp1 forkhead box P1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 297480, updated on 9-Dec-2024

    Summary

    Official Symbol
    Foxp1provided by RGD
    Official Full Name
    forkhead box P1provided by RGD
    Primary source
    RGD:1308669
    See related
    EnsemblRapid:ENSRNOG00000009184 AllianceGenome:RGD:1308669
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; nuclear androgen receptor binding activity; and transcription cis-regulatory region binding activity. Involved in several processes, including cellular response to tumor necrosis factor; negative regulation of cell growth involved in cardiac muscle cell development; and positive regulation of hydrogen peroxide-mediated programmed cell death. Predicted to be active in nucleus. Biomarker of hepatocellular carcinoma; lung adenocarcinoma; and trichostrongyloidiasis. Human ortholog(s) of this gene implicated in several diseases, including Barrett's esophagus; congenital heart disease; esophagus adenocarcinoma; intellectual disability-severe speech delay-mild dysmorphism syndrome; and peritonitis. Orthologous to human FOXP1 (forkhead box P1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 155.1), Spleen (RPKM 137.0) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Foxp1 in Genome Data Viewer
    Location:
    4q34
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (133117346..133808647, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (131559599..132155092, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (131362178..131963466, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 433 Neighboring gene uncharacterized LOC134486678 Neighboring gene uncharacterized LOC134486619 Neighboring gene small nucleolar RNA U3 Neighboring gene uncharacterized LOC102555037 Neighboring gene eukaryotic translation initiation factor 4E family member 3 Neighboring gene immediate early response 3 interacting protein 1, pseudogene 1 Neighboring gene G protein-coupled receptor 27

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Markers

    Clone Names

    • MGC116362

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA-binding transcription factor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables DNA-binding transcription factor activity, RNA polymerase II-specific ISO
    Inferred from Sequence Orthology
    more info
     
    enables DNA-binding transcription repressor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables DNA-binding transcription repressor activity, RNA polymerase II-specific ISO
    Inferred from Sequence Orthology
    more info
     
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables chromatin binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables core promoter sequence-specific DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables nuclear androgen receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables sequence-specific double-stranded DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables transcription coregulator binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in DNA damage response ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in T follicular helper cell differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in animal organ development IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within cardiac muscle cell differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cellular response to tumor necrosis factor IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in endothelial cell activation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in forebrain development IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    acts_upstream_of_or_within heart development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within immunoglobulin V(D)J recombination ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of innate vocalization behavior ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within lung development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within lung secretory cell differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in macrophage activation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in monocyte activation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in motor neuron axon guidance ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of B cell apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within negative regulation of DNA-templated transcription ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of DNA-templated transcription ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of androgen receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of cell growth involved in cardiac muscle cell development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within negative regulation of lung goblet cell differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in osteoclast development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in osteoclast differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of B cell receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of DNA-templated transcription ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within positive regulation of TORC1 signaling ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of endothelial cell migration ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within positive regulation of epithelial cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of hydrogen peroxide-mediated programmed cell death IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within positive regulation of immunoglobulin production ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of interleukin-21 production ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within positive regulation of mesenchymal cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of smooth muscle cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within pre-B cell differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of regulation of action potential ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within_positive_effect regulation of androgen receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of cardiac muscle cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of chemokine (C-X-C motif) ligand 2 production ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of defense response to bacterium ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of endothelial tube morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of inflammatory response ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of interleukin-1 beta production ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of interleukin-12 production ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of lung goblet cell differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of macrophage colony-stimulating factor production ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of monocyte differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in regulation of tumor necrosis factor production ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to lipopolysaccharide ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to testosterone IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    acts_upstream_of_or_within skeletal muscle tissue development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within smooth muscle tissue development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in striatum development IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    acts_upstream_of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in ventral spinal cord development ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034131.2NP_001029303.1  forkhead box protein P1

      See identical proteins and their annotated locations for NP_001029303.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/Swiss-Prot
      Q498D1
      UniProtKB/TrEMBL
      A0A8I6A8D7, A0A8I6AJR4
      Related
      ENSRNOP00000095477.1, ENSRNOT00000100443.2
      Conserved Domains (2) summary
      cd00059
      Location:499571
      FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
      pfam16159
      Location:336403
      FOXP-CC; FOXP coiled-coil domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      133117346..133808647 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063285823.1XP_063141893.1  forkhead box protein P1 isoform X1

      UniProtKB/TrEMBL
      A0A8I6A8D7, A0A8I6AJR4
    2. XM_063285827.1XP_063141897.1  forkhead box protein P1 isoform X5

      UniProtKB/TrEMBL
      A0A8I6A8D7, A0A8I6AJR4
    3. XM_063285826.1XP_063141896.1  forkhead box protein P1 isoform X4

      UniProtKB/TrEMBL
      A6IBG6
    4. XM_063285824.1XP_063141894.1  forkhead box protein P1 isoform X2

      UniProtKB/TrEMBL
      A0A8I6A8D7, A0A8I6AJR4
    5. XM_063285825.1XP_063141895.1  forkhead box protein P1 isoform X3

      UniProtKB/TrEMBL
      A0A8I6A8D7
    6. XM_063285822.1XP_063141892.1  forkhead box protein P1 isoform X1

      UniProtKB/TrEMBL
      A0A8I6A8D7, A0A8I6AJR4
    7. XM_063285835.1XP_063141905.1  forkhead box protein P1 isoform X9

      UniProtKB/TrEMBL
      A6IBG6
      Related
      ENSRNOP00000013271.6, ENSRNOT00000013271.8
    8. XM_063285832.1XP_063141902.1  forkhead box protein P1 isoform X8

      UniProtKB/TrEMBL
      A0A8I6A8D7, A0A8I6AJR4
    9. XM_063285831.1XP_063141901.1  forkhead box protein P1 isoform X7

      UniProtKB/TrEMBL
      A0A8I6A8D7
    10. XM_063285828.1XP_063141898.1  forkhead box protein P1 isoform X6

      UniProtKB/Swiss-Prot
      Q498D1
      UniProtKB/TrEMBL
      A0A8I6A8D7, A0A8I6AJR4
    11. XM_039107379.2XP_038963307.1  forkhead box protein P1 isoform X1

      UniProtKB/TrEMBL
      A0A8I6A8D7, A0A8I6AJR4
      Conserved Domains (3) summary
      COG5025
      Location:493707
      COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
      pfam16159
      Location:358425
      FOXP-CC; FOXP coiled-coil domain
      cd20065
      Location:520601
      FH_FOXP2; Forkhead (FH) domain found in Forkhead box protein P2 (FOXP2)
    12. XM_039107389.2XP_038963317.1  forkhead box protein P1 isoform X22

      UniProtKB/TrEMBL
      A6IBG6
      Conserved Domains (3) summary
      COG5025
      Location:470683
      COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
      pfam16159
      Location:335402
      FOXP-CC; FOXP coiled-coil domain
      cd20065
      Location:496577
      FH_FOXP2; Forkhead (FH) domain found in Forkhead box protein P2 (FOXP2)
    13. XM_039107378.2XP_038963306.1  forkhead box protein P1 isoform X1

      UniProtKB/TrEMBL
      A0A8I6A8D7, A0A8I6AJR4
      Conserved Domains (3) summary
      COG5025
      Location:493707
      COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
      pfam16159
      Location:358425
      FOXP-CC; FOXP coiled-coil domain
      cd20065
      Location:520601
      FH_FOXP2; Forkhead (FH) domain found in Forkhead box protein P2 (FOXP2)
    14. XM_063285829.1XP_063141899.1  forkhead box protein P1 isoform X6

      UniProtKB/Swiss-Prot
      Q498D1
      UniProtKB/TrEMBL
      A0A8I6A8D7, A0A8I6AJR4
    15. XM_063285833.1XP_063141903.1  forkhead box protein P1 isoform X8

      UniProtKB/TrEMBL
      A0A8I6A8D7, A0A8I6AJR4
    16. XM_039107381.2XP_038963309.1  forkhead box protein P1 isoform X1

      UniProtKB/TrEMBL
      A0A8I6A8D7, A0A8I6AJR4
      Conserved Domains (3) summary
      COG5025
      Location:493707
      COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
      pfam16159
      Location:358425
      FOXP-CC; FOXP coiled-coil domain
      cd20065
      Location:520601
      FH_FOXP2; Forkhead (FH) domain found in Forkhead box protein P2 (FOXP2)
    17. XM_063285834.1XP_063141904.1  forkhead box protein P1 isoform X8

      UniProtKB/TrEMBL
      A0A8I6A8D7, A0A8I6AJR4
    18. XM_063285830.1XP_063141900.1  forkhead box protein P1 isoform X6

      UniProtKB/Swiss-Prot
      Q498D1
      UniProtKB/TrEMBL
      A0A8I6A8D7, A0A8I6AJR4
    19. XM_039107382.2XP_038963310.1  forkhead box protein P1 isoform X1

      UniProtKB/TrEMBL
      A0A8I6A8D7, A0A8I6AJR4
      Conserved Domains (3) summary
      COG5025
      Location:493707
      COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
      pfam16159
      Location:358425
      FOXP-CC; FOXP coiled-coil domain
      cd20065
      Location:520601
      FH_FOXP2; Forkhead (FH) domain found in Forkhead box protein P2 (FOXP2)
    20. XM_039107388.2XP_038963316.1  forkhead box protein P1 isoform X12

      UniProtKB/TrEMBL
      A0A8I6A8D7
      Conserved Domains (3) summary
      COG5025
      Location:432646
      COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
      pfam16159
      Location:297364
      FOXP-CC; FOXP coiled-coil domain
      cd20065
      Location:459540
      FH_FOXP2; Forkhead (FH) domain found in Forkhead box protein P2 (FOXP2)
    21. XM_063285836.1XP_063141906.1  forkhead box protein P1 isoform X11

      UniProtKB/TrEMBL
      A0A8I6A8D7
    22. XM_039107387.2XP_038963315.1  forkhead box protein P1 isoform X10

      UniProtKB/TrEMBL
      A0A8I6A8D7
      Conserved Domains (3) summary
      COG5025
      Location:454668
      COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
      pfam16159
      Location:319386
      FOXP-CC; FOXP coiled-coil domain
      cd20065
      Location:481562
      FH_FOXP2; Forkhead (FH) domain found in Forkhead box protein P2 (FOXP2)
    23. XM_017592562.3XP_017448051.1  forkhead box protein P1 isoform X16

      UniProtKB/TrEMBL
      A0A8I6A8D7
      Conserved Domains (3) summary
      COG5025
      Location:339553
      COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
      pfam16159
      Location:204271
      FOXP-CC; FOXP coiled-coil domain
      cd20065
      Location:366447
      FH_FOXP2; Forkhead (FH) domain found in Forkhead box protein P2 (FOXP2)
    24. XM_063285841.1XP_063141911.1  forkhead box protein P1 isoform X18

      UniProtKB/TrEMBL
      A0A8I5ZVX5, A0A8I6A8D7
    25. XM_063285844.1XP_063141914.1  forkhead box protein P1 isoform X20

      UniProtKB/TrEMBL
      A0A8I6A8D7
    26. XM_063285840.1XP_063141910.1  forkhead box protein P1 isoform X17

      UniProtKB/TrEMBL
      A0A8I6A8D7
    27. XM_063285842.1XP_063141912.1  forkhead box protein P1 isoform X19

      UniProtKB/TrEMBL
      A0A8I6A8D7
    28. XM_063285838.1XP_063141908.1  forkhead box protein P1 isoform X14

      UniProtKB/TrEMBL
      A0A8I6A8D7
    29. XM_063285839.1XP_063141909.1  forkhead box protein P1 isoform X15

      UniProtKB/TrEMBL
      A0A8I6AJR4
    30. XM_063285837.1XP_063141907.1  forkhead box protein P1 isoform X13

      UniProtKB/TrEMBL
      A0A8I6AJR4
    31. XM_063285845.1XP_063141915.1  forkhead box protein P1 isoform X21

      UniProtKB/TrEMBL
      A0A8I6A8D7
    32. XM_006236955.5XP_006237017.1  forkhead box protein P1 isoform X16

      See identical proteins and their annotated locations for XP_006237017.1

      UniProtKB/TrEMBL
      A0A8I6A8D7
      Conserved Domains (3) summary
      COG5025
      Location:339553
      COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
      pfam16159
      Location:204271
      FOXP-CC; FOXP coiled-coil domain
      cd20065
      Location:366447
      FH_FOXP2; Forkhead (FH) domain found in Forkhead box protein P2 (FOXP2)
    33. XM_006236954.5XP_006237016.1  forkhead box protein P1 isoform X16

      See identical proteins and their annotated locations for XP_006237016.1

      UniProtKB/TrEMBL
      A0A8I6A8D7
      Conserved Domains (3) summary
      COG5025
      Location:339553
      COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
      pfam16159
      Location:204271
      FOXP-CC; FOXP coiled-coil domain
      cd20065
      Location:366447
      FH_FOXP2; Forkhead (FH) domain found in Forkhead box protein P2 (FOXP2)
    34. XM_006236956.4XP_006237018.1  forkhead box protein P1 isoform X17

      UniProtKB/TrEMBL
      A0A8I6A8D7
      Conserved Domains (2) summary
      cd00059
      Location:366438
      FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
      pfam16159
      Location:203270
      FOXP-CC; FOXP coiled-coil domain
    35. XM_063285843.1XP_063141913.1  forkhead box protein P1 isoform X19

      UniProtKB/TrEMBL
      A0A8I6A8D7