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    Cfap36 cilia and flagella associated protein 36 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 289859, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Cfap36provided by RGD
    Official Full Name
    cilia and flagella associated protein 36provided by RGD
    Primary source
    RGD:1311732
    See related
    EnsemblRapid:ENSRNOG00000003901 AllianceGenome:RGD:1311732
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Ccdc104; RGD1311732
    Summary
    Predicted to be located in ciliary transition zone. Predicted to be active in axoneme and ciliary base. Orthologous to human CFAP36 (cilia and flagella associated protein 36). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 559.6), Brain (RPKM 302.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Cfap36 in Genome Data Viewer
    Location:
    14q22
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (107166932..107192531, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (102966006..102991693, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (113618954..113644874, complement)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene polyribonucleotide nucleotidyltransferase 1 Neighboring gene protein phosphatase 4, regulatory subunit 3B Neighboring gene uncharacterized LOC134481880 Neighboring gene fibrillarin, pseudogene 2 Neighboring gene coiled coil domain containing 88A Neighboring gene large ribosomal subunit protein eL19-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The Interaction of CCDC104/BARTL1 with Arl3 and Implications for Ciliary Function. Lokaj M, et al. Structure, 2015 Nov 3. PMID 26455799, Free PMC Article
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC114472

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in axoneme IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in ciliary base IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in ciliary base ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in ciliary transition zone ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in motile cilium IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    cilia- and flagella-associated protein 36
    Names
    coiled-coil domain containing 104
    coiled-coil domain-containing protein 104

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024866.2 → NP_001020037.1  cilia- and flagella-associated protein 36

      See identical proteins and their annotated locations for NP_001020037.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/Swiss-Prot
      Q4V8E4
      UniProtKB/TrEMBL
      A0A8I5ZR96, A6JQB0
      Related
      ENSRNOP00000005306.5, ENSRNOT00000005306.7
      Conserved Domains (1) summary
      pfam11527
      Location:15 → 119
      ARL2_Bind_BART; The ARF-like 2 binding protein BART

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      107166932..107192531 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039091776.2 → XP_038947704.1  cilia- and flagella-associated protein 36 isoform X2

      UniProtKB/TrEMBL
      A6JQA9

    2. XM_006251598.4 → XP_006251660.1  cilia- and flagella-associated protein 36 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZR96, A0A8I6ATJ2
      Related
      ENSRNOP00000095466.1, ENSRNOT00000118027.2
      Conserved Domains (1) summary
      pfam11527
      Location:15 → 85
      ARL2_Bind_BART; The ARF-like 2 binding protein BART
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q4V8E4.1 GenPept UniProtKB/Swiss-Prot:Q4V8E4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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