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    Pcnx3 pecanex 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 309167, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Pcnx3provided by RGD
    Official Full Name
    pecanex 3provided by RGD
    Primary source
    RGD:1305529
    See related
    EnsemblRapid:ENSRNOG00000020742 AllianceGenome:RGD:1305529
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Pcnxl3
    Summary
    Predicted to be located in membrane. Orthologous to human PCNX3 (pecanex 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 101.3), Kidney (RPKM 97.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Pcnx3 in Genome Data Viewer
    Location:
    1q43
    Exon count:
    35
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (212380657..212402967, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (202951322..202974167, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (221019091..221041959, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene RELA proto-oncogene, NF-kB subunit Neighboring gene signal-induced proliferation-associated 1 Neighboring gene mitogen-activated protein kinase kinase kinase 11 Neighboring gene uncharacterized LOC102546344 Neighboring gene potassium two pore domain channel subfamily K member 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. FMRP recruitment of β-catenin to the translation pre-initiation complex represses translation. Ehyai S, et al. EMBO Rep, 2018 Dec. PMID 30361391, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    pecanex-like protein 3
    Names
    pecanex homolog 3

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001432284.1 → NP_001419213.1  pecanex-like protein 3 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6AU25

    2. NM_001432287.1 → NP_001419216.1  pecanex-like protein 3 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6AU25

    3. NM_001432288.1 → NP_001419217.1  pecanex-like protein 3 isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6AU25

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      212380657..212402967 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063279860.1 → XP_063135930.1  pecanex-like protein 3 isoform X5

    2. XM_063279866.1 → XP_063135936.1  pecanex-like protein 3 isoform X7

      Related
      ENSRNOP00000109557.1, ENSRNOT00000168853.1

    3. XM_006230948.5 → XP_006231010.1  pecanex-like protein 3 isoform X2

      See identical proteins and their annotated locations for XP_006231010.1

      UniProtKB/TrEMBL
      A0A8I6AU25
      Related
      ENSRNOP00000106094.1, ENSRNOT00000136741.1
      Conserved Domains (2) summary
      pfam05041
      Location:1582 → 1807
      Pecanex_C; Pecanex protein (C-terminus)
      cl21589
      Location:419 → 626
      Relaxase; Relaxase/Mobilization nuclease domain

    4. XM_006230952.5 → XP_006231014.1  pecanex-like protein 3 isoform X9

      See identical proteins and their annotated locations for XP_006231014.1

      UniProtKB/TrEMBL
      A0A8I6AU25
      Conserved Domains (2) summary
      pfam05041
      Location:1560 → 1785
      Pecanex_C; Pecanex protein (C-terminus)
      cl21589
      Location:419 → 622
      Relaxase; Relaxase/Mobilization nuclease domain

    5. XM_039094892.2 → XP_038950820.1  pecanex-like protein 3 isoform X8

      UniProtKB/TrEMBL
      A0A8I6AU25

    6. XM_006230950.5 → XP_006231012.1  pecanex-like protein 3 isoform X4

      See identical proteins and their annotated locations for XP_006231012.1

      UniProtKB/TrEMBL
      A0A8I6AU25
      Conserved Domains (2) summary
      pfam05041
      Location:1573 → 1798
      Pecanex_C; Pecanex protein (C-terminus)
      cl21589
      Location:419 → 622
      Relaxase; Relaxase/Mobilization nuclease domain

    7. XM_219515.11 → XP_219515.4  pecanex-like protein 3 isoform X6

      Related
      ENSRNOP00000095745.1, ENSRNOT00000097729.2
      Conserved Domains (2) summary
      pfam05041
      Location:1570 → 1795
      Pecanex_C; Pecanex protein (C-terminus)
      cl21589
      Location:419 → 622
      Relaxase; Relaxase/Mobilization nuclease domain

    8. XM_039094887.2 → XP_038950815.1  pecanex-like protein 3 isoform X3

      UniProtKB/TrEMBL
      A0A8I6AU25
      Conserved Domains (2) summary
      PHA03247
      Location:201 → 655
      PHA03247; large tegument protein UL36; Provisional
      pfam05041
      Location:1577 → 1803
      Pecanex_C; Pecanex protein (C-terminus)

    9. XM_006230947.5 → XP_006231009.1  pecanex-like protein 3 isoform X1

      See identical proteins and their annotated locations for XP_006231009.1

      UniProtKB/TrEMBL
      A0A8I6AU25, D3ZSQ1
      Related
      ENSRNOP00000059738.2, ENSRNOT00000064136.5
      Conserved Domains (2) summary
      pfam05041
      Location:1583 → 1808
      Pecanex_C; Pecanex protein (C-terminus)
      cl21589
      Location:419 → 622
      Relaxase; Relaxase/Mobilization nuclease domain
    Nucleotide Protein Strain
    Heading Accession and Version

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