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    Kiaa0040 KIAA0040 ortholog [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100302372, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Kiaa0040provided by RGD
    Official Full Name
    KIAA0040 orthologprovided by RGD
    Primary source
    RGD:2311260
    See related
    EnsemblRapid:ENSRNOG00000049537 AllianceGenome:RGD:2311260
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. Orthologous to human KIAA0040 (KIAA0040). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Spleen (RPKM 116.3), Thymus (RPKM 81.9) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Kiaa0040 in Genome Data Viewer
    Location:
    13q22
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (74807959..74845530)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (72274519..72312103)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (77784516..77822333)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene COP1, E3 ubiquitin ligase Neighboring gene microRNA 1843b Neighboring gene tenascin R Neighboring gene uncharacterized LOC134481521 Neighboring gene uncharacterized LOC120096295 Neighboring gene tenascin N Neighboring gene mitochondrial ribosomal protein S14

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein KIAA0040 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001162897.1 → NP_001156369.1  uncharacterized protein KIAA0040 homolog

      See identical proteins and their annotated locations for NP_001156369.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000013
      UniProtKB/TrEMBL
      A0A8I5Y713

    2. NM_001162898.1 → NP_001156370.1  uncharacterized protein KIAA0040 homolog

      See identical proteins and their annotated locations for NP_001156370.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000013
      UniProtKB/TrEMBL
      A0A8I5Y713
      Related
      ENSRNOP00000078069.1, ENSRNOT00000076888.3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      74807959..74845530
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039090220.2 → XP_038946148.1  uncharacterized protein KIAA0040 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8I5Y713

    2. XM_063271935.1 → XP_063128005.1  uncharacterized protein KIAA0040 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8I5Y713

    3. XM_039090219.2 → XP_038946147.1  uncharacterized protein KIAA0040 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8I5Y713
    Nucleotide Protein Strain
    Heading Accession and Version

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