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    LOC100912041 uncharacterized LOC100912041 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100912041, updated on 17-Aug-2024

    Summary

    Symbol
    LOC100912041provided by RGD
    Full Name
    uncharacterized LOC100912041provided by RGD
    Primary source
    RGD:6489539
    See related
    AllianceGenome:RGD:6489539
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Thymus (RPKM 253.2), Spleen (RPKM 200.7) and 9 other tissues See more
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    Genomic context

    See LOC100912041 in Genome Data Viewer
    Location:
    1q43
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (215048335..215051624)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (205619202..205622491)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (224921300..224924589)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene cholinergic receptor, muscarinic 1 Neighboring gene solute carrier family 3 member 2 Neighboring gene small nucleolar RNA SNORD29 Neighboring gene small nucleolar RNA SNORD31 Neighboring gene small nucleolar RNA SNORD22 Neighboring gene small nucleolar RNA, C/D box 28B Neighboring gene small nucleolar RNA, C/D box 26 Neighboring gene small nucleolar RNA, C/D box 27 Neighboring gene small nucleolar RNA, C/D box 30 Neighboring gene SUMO specific peptidase 5 like 1 Neighboring gene U2 spliceosomal RNA

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131096.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      FM045041, JAXUCZ010000001

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      215048335..215051624
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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