Cd300c2 CD300C molecule 2 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Cd300c2provided by RGD
Official Full Name: CD300C molecule 2provided by RGD
Primary source: RGD:1561778
See related: EnsemblRapid:ENSRNOG00000050974 AllianceGenome:RGD:1561778
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1561778
Summary: Predicted to be involved in immune system process. Predicted to act upstream of or within positive regulation of cytokine production. Predicted to be located in plasma membrane. Orthologous to human CD300C (CD300c molecule). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Spleen (RPKM 186.2), Lung (RPKM 156.9) and 8 other tissues See more
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Genomic context

Location:: 10q32.1

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	10	NC_086028.1 (100752301..100757549, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	10	NC_051345.1 (100253312..100258553, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	10	NC_005109.4 (104997205..104999942)

Chromosome 10 - NC_086028.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in immune system process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within positive regulation of cytokine production	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
located_in plasma membrane	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: CD300C molecule 2

Names: immune activating receptor CD300d2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001168284.1 → NP_001161756.1 CD300C molecule 2 precursor

See identical proteins and their annotated locations for NP_001161756.1

Status: PROVISIONAL

Source sequence(s)

GU138868

UniProtKB/TrEMBL

D1MF50, M0R3P5

Related

ENSRNOP00000074560.2, ENSRNOT00000085222.3

Conserved Domains (2) summary

cd05716
Location:31 → 115

Ig_pIgR; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

smart00410
Location:28 → 112

IG_like; Immunoglobulin like