Colgalt1 collagen beta(1-O)galactosyltransferase 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Colgalt1provided by RGD
Official Full Name: collagen beta(1-O)galactosyltransferase 1provided by RGD
Primary source: RGD:1309002
See related: EnsemblRapid:ENSRNOG00000023317 AllianceGenome:RGD:1309002
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Glt25d1; RGD1309002
Summary: Predicted to enable procollagen galactosyltransferase activity. Predicted to be involved in positive regulation of collagen fibril organization. Predicted to be located in endoplasmic reticulum lumen. Human ortholog(s) of this gene implicated in brain small vessel disease 3. Orthologous to human COLGALT1 (collagen beta(1-O)galactosyltransferase 1). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Spleen (RPKM 213.7), Lung (RPKM 195.9) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 16p14

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	16	NC_086034.1 (18353779..18366087)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	16	NC_051351.1 (18319796..18332106)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	16	NC_005115.4 (20039969..20052277)

Chromosome 16 - NC_086034.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables procollagen galactosyltransferase activity	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
involved_in positive regulation of collagen fibril organization	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
located_in endoplasmic reticulum lumen	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: procollagen galactosyltransferase 1

Names: glycosyltransferase 25 domain containing 1

NP_001099537.1

EC 2.4.1.50

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001106067.2 → NP_001099537.1 procollagen galactosyltransferase 1 precursor

See identical proteins and their annotated locations for NP_001099537.1

Status: PROVISIONAL

Source sequence(s)

BC160899

UniProtKB/TrEMBL

A6K9X0, B1H282, F6T463

Related

ENSRNOP00000024866.4, ENSRNOT00000024866.7

Conserved Domains (2) summary

pfam01755
Location:335 → 520

Glyco_transf_25; Glycosyltransferase family 25 (LPS biosynthesis protein)

pfam13704
Location:56 → 170

Glyco_tranf_2_4; Glycosyl transferase family 2