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    Spata1 spermatogenesis associated 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362056, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Spata1provided by RGD
    Official Full Name
    spermatogenesis associated 1provided by RGD
    Primary source
    RGD:1359500
    See related
    EnsemblRapid:ENSRNOG00000015678 AllianceGenome:RGD:1359500
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in acrosomal vesicle. Orthologous to human SPATA1 (spermatogenesis associated 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 154.6), Thymus (RPKM 76.9) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Spata1 in Genome Data Viewer
    Location:
    2q44
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (238009403..238054855, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (235349126..235394578, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (252313293..252359798, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 777 Neighboring gene SSX family member 2 interacting protein Neighboring gene chitobiase Neighboring gene uncharacterized LOC134485993 Neighboring gene G protein subunit gamma 5 Neighboring gene ribosome production factor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    NOT located_in acrosomal vesicle ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in acrosomal vesicle ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in acrosomal vesicle ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in cytoplasmic vesicle ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    spermatogenesis-associated protein 1

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014177.1 → NP_001014199.1  spermatogenesis-associated protein 1

      See identical proteins and their annotated locations for NP_001014199.1

      Status: PROVISIONAL

      Source sequence(s)
      BC079224
      UniProtKB/Swiss-Prot
      Q6AY22
      UniProtKB/TrEMBL
      A6HWD8
      Related
      ENSRNOP00000021063.4, ENSRNOT00000021063.6
      Conserved Domains (1) summary
      pfam15743
      Location:280 → 428
      SPATA1_C; Spermatogenesis-associated C-terminus

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      238009403..238054855 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039102734.2 → XP_038958662.1  spermatogenesis-associated protein 1 isoform X8

      UniProtKB/TrEMBL
      A6HWD8
      Conserved Domains (1) summary
      pfam15743
      Location:280 → 421
      SPATA1_C; Spermatogenesis-associated C-terminus

    2. XM_039102733.1 → XP_038958661.1  spermatogenesis-associated protein 1 isoform X6

      UniProtKB/TrEMBL
      A6HWD8
      Conserved Domains (1) summary
      pfam15743
      Location:280 → 427
      SPATA1_C; Spermatogenesis-associated C-terminus

    3. XM_039102731.2 → XP_038958659.1  spermatogenesis-associated protein 1 isoform X2

      UniProtKB/TrEMBL
      A6HWD8
      Conserved Domains (1) summary
      pfam15743
      Location:280 → 434
      SPATA1_C; Spermatogenesis-associated C-terminus

    4. XM_063282241.1 → XP_063138311.1  spermatogenesis-associated protein 1 isoform X9

    5. XM_063282240.1 → XP_063138310.1  spermatogenesis-associated protein 1 isoform X9

    6. XM_063282239.1 → XP_063138309.1  spermatogenesis-associated protein 1 isoform X9

    7. XM_063282238.1 → XP_063138308.1  spermatogenesis-associated protein 1 isoform X9

    8. XM_063282237.1 → XP_063138307.1  spermatogenesis-associated protein 1 isoform X8

      UniProtKB/TrEMBL
      A6HWD8

    9. XM_063282235.1 → XP_063138305.1  spermatogenesis-associated protein 1 isoform X5

      UniProtKB/Swiss-Prot
      Q6AY22
      UniProtKB/TrEMBL
      A6HWD8

    10. XM_063282234.1 → XP_063138304.1  spermatogenesis-associated protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8I6AHH4

    11. XM_063282236.1 → XP_063138306.1  spermatogenesis-associated protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A8I6AHH4

    12. XM_063282232.1 → XP_063138302.1  spermatogenesis-associated protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AHH4

    13. XM_063282233.1 → XP_063138303.1  spermatogenesis-associated protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8I6AHH4
      Related
      ENSRNOP00000093363.1, ENSRNOT00000095066.2

    14. XM_039102732.2 → XP_038958660.2  spermatogenesis-associated protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AHH4
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6AY22.1 GenPept UniProtKB/Swiss-Prot:Q6AY22

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