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    Cdv3l1 carnitine deficiency-associated gene expressed in ventricle 3 like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499235, updated on 4-Jan-2025

    Summary

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    Official Symbol
    Cdv3l1provided by RGD
    Official Full Name
    carnitine deficiency-associated gene expressed in ventricle 3 like 1provided by RGD
    Primary source
    RGD:1565730
    See related
    EnsemblRapid:ENSRNOG00000086256 AllianceGenome:RGD:1565730
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Cdv3
    Summary
    Orthologous to human CDV3 (CDV3 homolog). [provided by Alliance of Genome Resources, Jan 2025]
    Expression
    Biased expression in Thymus (RPKM 524.1), Heart (RPKM 334.1) and 9 other tissues See more
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    Genomic context

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    See Cdv3l1 in Genome Data Viewer
    Location:
    1q33
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (171091997..171093311, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (161678311..161681564, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (171996406..171997611, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene olfactomedin-like 1 Neighboring gene PPFIA binding protein 2 Neighboring gene cytochrome b5 reductase 2 Neighboring gene ovochymase 2 Neighboring gene olfactory receptor family 5 subfamily P member 5B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The role of Sp1 and AP-2 in basal and protein kinase A--induced expression of mitochondrial serine:pyruvate aminotransferase in hepatocytes. Uchida C, et al. J Biol Chem, 2002 Oct 18. PMID 12169688
    2. Transcription factor AP-2 interacts with the SUMO-conjugating enzyme UBC9 and is sumolated in vivo. Eloranta JJ, et al. J Biol Chem, 2002 Aug 23. PMID 12072434
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Cdv3 protein; protein CDV3
    Names
    LRRGT00141

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      171091997..171093311 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_574528.8 → XP_574528.1  protein CDV3

      See identical proteins and their annotated locations for XP_574528.1

      UniProtKB/TrEMBL
      Q6QI67
      Related
      ENSRNOP00000109409.1, ENSRNOT00000135215.1
      Conserved Domains (1) summary
      pfam15359
      Location:30 → 101
      CDV3; Carnitine deficiency-associated protein 3
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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