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    Rusf1 RUS family member 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361654, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Rusf1provided by RGD
    Official Full Name
    RUS family member 1provided by RGD
    Primary source
    RGD:1310127
    See related
    EnsemblRapid:ENSRNOG00000020144 AllianceGenome:RGD:1310127
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310127
    Summary
    Predicted to be located in membrane. Orthologous to human RUSF1 (RUS family member 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 328.4), Lung (RPKM 136.2) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Rusf1 in Genome Data Viewer
    Location:
    1q37
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (192282708..192312119, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (182852257..182881652, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (199687775..199716205, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene armadillo repeat containing 5 Neighboring gene transforming growth factor beta 1 induced transcript 1 Neighboring gene solute carrier family 5 member 2 Neighboring gene uncharacterized LOC120099940 Neighboring gene alpha hemoglobin stabilizing protein Neighboring gene uncharacterized LOC134485178 Neighboring gene uncharacterized LOC103691239

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Defining the membrane proteome of NK cells. Ghosh D, et al. J Mass Spectrom, 2010 Jan. PMID 19946888
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC124784

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RUS family member 1
    Names
    RUS1 family protein C16orf58 homolog
    UPF0420 protein C16orf58 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001035517.1 → NP_001030594.1  RUS family member 1

      See identical proteins and their annotated locations for NP_001030594.1

      Status: PROVISIONAL

      Source sequence(s)
      BC099813
      UniProtKB/Swiss-Prot
      Q499P8
      UniProtKB/TrEMBL
      A6I9Z8, G3V8P5
      Related
      ENSRNOP00000027290.4, ENSRNOT00000027290.7
      Conserved Domains (1) summary
      pfam04884
      Location:66 → 301
      DUF647; Vitamin B6 photo-protection and homoeostasis

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      192282708..192312119 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039083001.2 → XP_038938929.1  RUS family member 1 isoform X1

      Conserved Domains (1) summary
      pfam04884
      Location:23 → 225
      DUF647; Vitamin B6 photo-protection and homoeostasis

    2. XM_039083016.2 → XP_038938944.1  RUS family member 1 isoform X2

      Conserved Domains (1) summary
      pfam04884
      Location:61 → 240
      DUF647; Vitamin B6 photo-protection and homoeostasis

    RNA

    1. XR_010054649.1 RNA Sequence

    2. XR_005488847.2 RNA Sequence

    3. XR_010054651.1 RNA Sequence

    4. XR_010054650.1 RNA Sequence

    5. XR_005488850.2 RNA Sequence

    6. XR_005488849.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q499P8.1 GenPept UniProtKB/Swiss-Prot:Q499P8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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