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    Ssbp2 single-stranded DNA binding protein 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361877, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ssbp2provided by RGD
    Official Full Name
    single-stranded DNA binding protein 2provided by RGD
    Primary source
    RGD:1562968
    See related
    EnsemblRapid:ENSRNOG00000016213 AllianceGenome:RGD:1562968
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1562968
    Summary
    Predicted to enable single-stranded DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human SSBP2 (single stranded DNA binding protein 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 158.2), Heart (RPKM 65.1) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Ssbp2 in Genome Data Viewer
    Location:
    2q12
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (24385494..24673768)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (22650488..22938669)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (20416795..20707838)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134485571 Neighboring gene uncharacterized LOC134485570 Neighboring gene uncharacterized LOC120100665 Neighboring gene uncharacterized LOC103691419 Neighboring gene transfer RNA leucine (anticodon AAG) 15 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene acyl-CoA thioesterase 12

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cytoplasm  
    is_active_in nucleus  

    General protein information

    Preferred Names
    single-stranded DNA-binding protein 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001399027.1NP_001385956.1  single-stranded DNA-binding protein 2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      F1M3J3
      Conserved Domains (2) summary
      smart00667
      Location:1945
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:99355
      SSDP; Single-stranded DNA binding protein, SSDP
    2. NM_001399028.1NP_001385957.1  single-stranded DNA-binding protein 2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      A0A8I6AA81, A0A8I6ALH6
      Related
      ENSRNOP00000094798.2, ENSRNOT00000109181.2
      Conserved Domains (2) summary
      smart00667
      Location:1945
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:83346
      SSDP; Single-stranded DNA binding protein, SSDP
    3. NM_001399029.1NP_001385958.1  single-stranded DNA-binding protein 2 isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      F1M3J3
      Conserved Domains (2) summary
      smart00667
      Location:1945
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:83339
      SSDP; Single-stranded DNA binding protein, SSDP
    4. NM_001399030.1NP_001385959.1  single-stranded DNA-binding protein 2 isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      F1M3J3
      Related
      ENSRNOP00000112474.1, ENSRNOT00000137293.1
      Conserved Domains (2) summary
      smart00667
      Location:1945
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:83338
      SSDP; Single-stranded DNA binding protein, SSDP
    5. NM_001399031.1NP_001385960.1  single-stranded DNA-binding protein 2 isoform 5

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      F1M3J3
    6. NM_001399032.1NP_001385961.1  single-stranded DNA-binding protein 2 isoform 6

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      A0A8I6AA81
      Conserved Domains (2) summary
      smart00667
      Location:1945
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:92309
      SSDP; Single-stranded DNA binding protein, SSDP
    7. NM_001399033.1NP_001385962.1  single-stranded DNA-binding protein 2 isoform 7

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      A0A8I6AA81
      Related
      ENSRNOP00000104531.1, ENSRNOT00000153761.1
      Conserved Domains (2) summary
      smart00667
      Location:1945
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:92308
      SSDP; Single-stranded DNA binding protein, SSDP
    8. NM_001399034.1NP_001385963.1  single-stranded DNA-binding protein 2 isoform 8

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      A0A8I6AA81, A0A8I6GBJ4
      Related
      ENSRNOP00000103552.1, ENSRNOT00000151109.1
    9. NM_001399035.1NP_001385964.1  single-stranded DNA-binding protein 2 isoform 9

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      A0A8I6ACS5
      Related
      ENSRNOP00000106335.1, ENSRNOT00000147077.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      24385494..24673768
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063282020.1XP_063138090.1  single-stranded DNA-binding protein 2 isoform X33

    2. XM_063282022.1XP_063138092.1  single-stranded DNA-binding protein 2 isoform X34

      UniProtKB/TrEMBL
      A6I4P6
    3. XM_039103448.2XP_038959376.1  single-stranded DNA-binding protein 2 isoform X31

      Conserved Domains (1) summary
      pfam04503
      Location:19272
      SSDP; Single-stranded DNA binding protein, SSDP
    4. XM_063282003.1XP_063138073.1  single-stranded DNA-binding protein 2 isoform X2

    5. XM_039103427.2XP_038959355.1  single-stranded DNA-binding protein 2 isoform X3

      Conserved Domains (2) summary
      smart00667
      Location:80108
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:162425
      SSDP; Single-stranded DNA binding protein, SSDP
    6. XM_039103428.2XP_038959356.1  single-stranded DNA-binding protein 2 isoform X4

      Conserved Domains (2) summary
      smart00667
      Location:80108
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:162418
      SSDP; Single-stranded DNA binding protein, SSDP
    7. XM_039103429.2XP_038959357.1  single-stranded DNA-binding protein 2 isoform X5

      Conserved Domains (2) summary
      smart00667
      Location:80108
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:162417
      SSDP; Single-stranded DNA binding protein, SSDP
    8. XM_063282006.1XP_063138076.1  single-stranded DNA-binding protein 2 isoform X10

    9. XM_063282007.1XP_063138077.1  single-stranded DNA-binding protein 2 isoform X11

    10. XM_039103430.2XP_038959358.1  single-stranded DNA-binding protein 2 isoform X12

      Conserved Domains (2) summary
      smart00667
      Location:80108
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:171388
      SSDP; Single-stranded DNA binding protein, SSDP
    11. XM_063282008.1XP_063138078.1  single-stranded DNA-binding protein 2 isoform X13

    12. XM_008760646.4XP_008758868.2  single-stranded DNA-binding protein 2 isoform X6

    13. XM_063282004.1XP_063138074.1  single-stranded DNA-binding protein 2 isoform X7

    14. XM_008760648.4XP_008758870.2  single-stranded DNA-binding protein 2 isoform X8

      UniProtKB/TrEMBL
      F1M3J3
    15. XM_008760649.4XP_008758871.2  single-stranded DNA-binding protein 2 isoform X9

      UniProtKB/TrEMBL
      F1M3J3
      Related
      ENSRNOP00000021857.8, ENSRNOT00000021857.10
    16. XM_063282009.1XP_063138079.1  single-stranded DNA-binding protein 2 isoform X14

    17. XM_063282010.1XP_063138080.1  single-stranded DNA-binding protein 2 isoform X16

    18. XM_063282011.1XP_063138081.1  single-stranded DNA-binding protein 2 isoform X17

    19. XM_008760653.4XP_008758875.2  single-stranded DNA-binding protein 2 isoform X18

    20. XM_039103432.2XP_038959360.1  single-stranded DNA-binding protein 2 isoform X15

      UniProtKB/TrEMBL
      F1M3J3
      Conserved Domains (1) summary
      pfam04503
      Location:116380
      SSDP; Single-stranded DNA binding protein, SSDP
    21. XM_039103433.2XP_038959361.1  single-stranded DNA-binding protein 2 isoform X19

      UniProtKB/TrEMBL
      F1M3J3
      Conserved Domains (1) summary
      pfam04503
      Location:105369
      SSDP; Single-stranded DNA binding protein, SSDP
    22. XM_039103434.2XP_038959362.1  single-stranded DNA-binding protein 2 isoform X21

      UniProtKB/TrEMBL
      A0A8I6AA81
      Conserved Domains (2) summary
      smart00667
      Location:1945
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:99363
      SSDP; Single-stranded DNA binding protein, SSDP
    23. XM_039103447.2XP_038959375.1  single-stranded DNA-binding protein 2 isoform X31

      Conserved Domains (1) summary
      pfam04503
      Location:19272
      SSDP; Single-stranded DNA binding protein, SSDP
    24. XM_063282015.1XP_063138085.1  single-stranded DNA-binding protein 2 isoform X25

    25. XM_063282016.1XP_063138086.1  single-stranded DNA-binding protein 2 isoform X27

      UniProtKB/TrEMBL
      A0A8I6AA81
    26. XM_039103436.2XP_038959364.1  single-stranded DNA-binding protein 2 isoform X22

      UniProtKB/TrEMBL
      A0A8I6AA81
      Related
      ENSRNOP00000105179.1, ENSRNOT00000135516.1
      Conserved Domains (2) summary
      smart00667
      Location:1945
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:83347
      SSDP; Single-stranded DNA binding protein, SSDP
    27. XM_039103442.2XP_038959370.1  single-stranded DNA-binding protein 2 isoform X28

      UniProtKB/TrEMBL
      A0A8I6AA81, A0A8I6AH80
      Conserved Domains (2) summary
      smart00667
      Location:1945
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:92316
      SSDP; Single-stranded DNA binding protein, SSDP
    28. XM_063282012.1XP_063138082.1  single-stranded DNA-binding protein 2 isoform X20

      UniProtKB/TrEMBL
      F1M3J3
    29. XM_063282017.1XP_063138087.1  single-stranded DNA-binding protein 2 isoform X29

      UniProtKB/TrEMBL
      F1M3J3
    30. XM_063282014.1XP_063138084.1  single-stranded DNA-binding protein 2 isoform X24

      UniProtKB/TrEMBL
      A0A8I6AA81
    31. XM_063282013.1XP_063138083.1  single-stranded DNA-binding protein 2 isoform X23

      UniProtKB/TrEMBL
      F1M3J3
    32. XM_063282019.1XP_063138089.1  single-stranded DNA-binding protein 2 isoform X32

    33. XM_063282021.1XP_063138091.1  single-stranded DNA-binding protein 2 isoform X34

      UniProtKB/TrEMBL
      A6I4P6
    34. XM_063282024.1XP_063138094.1  single-stranded DNA-binding protein 2 isoform X35

      UniProtKB/TrEMBL
      A6I4P7
    35. XM_063282002.1XP_063138072.1  single-stranded DNA-binding protein 2 isoform X1

    36. XM_063282018.1XP_063138088.1  single-stranded DNA-binding protein 2 isoform X31

    37. XM_039103440.2XP_038959368.1  single-stranded DNA-binding protein 2 isoform X26

      UniProtKB/TrEMBL
      F1M3J3
      Conserved Domains (1) summary
      pfam04503
      Location:56320
      SSDP; Single-stranded DNA binding protein, SSDP
    38. XM_039103445.2XP_038959373.1  single-stranded DNA-binding protein 2 isoform X30

      UniProtKB/TrEMBL
      F1M3J3
      Conserved Domains (1) summary
      pfam04503
      Location:40304
      SSDP; Single-stranded DNA binding protein, SSDP
    39. XM_039103449.2XP_038959377.1  single-stranded DNA-binding protein 2 isoform X31

      Conserved Domains (1) summary
      pfam04503
      Location:19272
      SSDP; Single-stranded DNA binding protein, SSDP
    40. XM_063282023.1XP_063138093.1  single-stranded DNA-binding protein 2 isoform X34

      UniProtKB/TrEMBL
      A6I4P6
    41. XM_063282025.1XP_063138095.1  single-stranded DNA-binding protein 2 isoform X35

      UniProtKB/TrEMBL
      A6I4P7
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