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    Brd10 bromodomain containing 10 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 309307, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Brd10provided by RGD
    Official Full Name
    bromodomain containing 10provided by RGD
    Primary source
    RGD:1311595
    See related
    EnsemblRapid:ENSRNOG00000026942 AllianceGenome:RGD:1311595
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Kiaa2026; RGD1311595
    Summary
    Orthologous to human BRD10 (bromodomain containing 10). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 77.0), Kidney (RPKM 63.9) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Brd10 in Genome Data Viewer
    Location:
    1q52
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (236904520..236984414, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (227490983..227572246, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (247898572..247978661, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120100018 Neighboring gene melan-A Neighboring gene 60S ribosomal protein L7a pseudogene Neighboring gene RAN binding protein 6 Neighboring gene tRNA methyltransferase 6, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein KIAA2026 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419462.1 → NP_001406391.1  uncharacterized protein KIAA2026 homolog

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      F1LRC7
      Related
      ENSRNOP00000032296.7, ENSRNOT00000039428.8

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      236904520..236984414 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017590340.3 → XP_017445829.1  uncharacterized protein KIAA2026 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8I6A0T7
      Related
      ENSRNOP00000107040.1, ENSRNOT00000171558.1

    2. XM_006231257.5 → XP_006231319.1  uncharacterized protein KIAA2026 homolog isoform X1

      See identical proteins and their annotated locations for XP_006231319.1

      Related
      ENSRNOP00000084223.2, ENSRNOT00000106795.2
      Conserved Domains (3) summary
      cd04369
      Location:136 → 192
      Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      pfam05672
      Location:252 → 291
      MAP7; MAP7 (E-MAP-115) family
      pfam06936
      Location:224 → 286
      Selenoprotein_S; Selenoprotein S (SelS)

    3. XM_063264589.1 → XP_063120659.1  uncharacterized protein KIAA2026 homolog isoform X3

    4. XM_063264590.1 → XP_063120660.1  uncharacterized protein KIAA2026 homolog isoform X4

    5. XM_039101404.2 → XP_038957332.1  uncharacterized protein KIAA2026 homolog isoform X5

    6. XM_039101405.2 → XP_038957333.1  uncharacterized protein KIAA2026 homolog isoform X6

    RNA

    1. XR_010053666.1 RNA Sequence

    2. XR_010053671.1 RNA Sequence

    3. XR_005499640.2 RNA Sequence

    4. XR_005499641.2 RNA Sequence

    5. XR_005499642.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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