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    Ttc34 tetratricopeptide repeat domain 34 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 366517, updated on 9-Dec-2024

    Summary

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    Symbol
    Ttc34provided by RGD
    Full Name
    tetratricopeptide repeat domain 34provided by RGD
    Primary source
    RGD:1304840
    See related
    EnsemblRapid:ENSRNOG00000024526 AllianceGenome:RGD:1304840
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1304840
    Summary
    Orthologous to human TTC34 (tetratricopeptide repeat domain 34). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 5.8), Brain (RPKM 2.7) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ttc34 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (170693410..170711215)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (165411063..165428864)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (172253257..172271056)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102555491 Neighboring gene uncharacterized LOC134479058 Neighboring gene membrane metallo-endopeptidase-like 1 Neighboring gene peroxiredoxin like 2B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    tetratricopeptide repeat protein 34

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      170693410..170711215
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039111371.2 → XP_038967299.1  tetratricopeptide repeat protein 34

      UniProtKB/TrEMBL
      D3ZC99
      Related
      ENSRNOP00000029146.5, ENSRNOT00000037211.6
      Conserved Domains (2) summary
      TIGR02917
      Location:541 → 920
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:676 → 704
      TPR; TPR repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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