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    Znf865 zinc finger protein 865 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100911196, updated on 9-Dec-2024

    Summary

    Official Symbol
    Znf865provided by RGD
    Official Full Name
    zinc finger protein 865provided by RGD
    Primary source
    RGD:6494165
    See related
    EnsemblRapid:ENSRNOG00000028628 AllianceGenome:RGD:6494165
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable metal ion binding activity. Predicted to be located in nucleus. Orthologous to human ZNF865 (zinc finger protein 865). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 36.4), Thymus (RPKM 35.5) and 9 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Znf865 in Genome Data Viewer
    Location:
    1q12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (77839504..77853507, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (68810664..68824652, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (72362242..72374599, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene zinc finger protein 865 Neighboring gene zinc finger protein 524 Neighboring gene FLT3-interacting zinc finger 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in nucleus  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401756.1NP_001388685.1  zinc finger protein 865

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I5ZTV8
      Related
      ENSRNOP00000104766.1, ENSRNOT00000172652.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      77839504..77853507 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063284309.1XP_063140379.1  zinc finger protein 865 isoform X5

    2. XM_039100562.2XP_038956490.1  zinc finger protein 865 isoform X2

      Conserved Domains (5) summary
      PHA03378
      Location:142328
      PHA03378; EBNA-3B; Provisional
      COG5048
      Location:328400
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:527547
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:420440
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:540563
      zf-H2C2_2; Zinc-finger double domain
    3. XM_063284300.1XP_063140370.1  zinc finger protein 865 isoform X4

      UniProtKB/TrEMBL
      A6KNR3, M0R740
    4. XM_017589961.3XP_017445450.1  zinc finger protein 865 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZTV8
      Related
      ENSRNOP00000101500.1, ENSRNOT00000155383.1
      Conserved Domains (5) summary
      PHA03378
      Location:163349
      PHA03378; EBNA-3B; Provisional
      COG5048
      Location:349421
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:548568
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:441461
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:561584
      zf-H2C2_2; Zinc-finger double domain
    5. XM_008759010.3XP_008757232.1  zinc finger protein 865 isoform X3

      See identical proteins and their annotated locations for XP_008757232.1

      Conserved Domains (6) summary
      COG5048
      Location:381453
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:580600
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:473493
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:252274
      zf-C2H2; Zinc finger, C2H2 type
      pfam12446
      Location:304380
      DUF3682; Protein of unknown function (DUF3682)
      pfam13465
      Location:593615
      zf-H2C2_2; Zinc-finger double domain

    RNA

    1. XR_350148.3 RNA Sequence

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