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    Tmem54 transmembrane protein 54 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362605, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tmem54provided by RGD
    Official Full Name
    transmembrane protein 54provided by RGD
    Primary source
    RGD:1304886
    See related
    EnsemblRapid:ENSRNOG00000024259 AllianceGenome:RGD:1304886
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1304886
    Summary
    Predicted to be located in membrane. Orthologous to human TMEM54 (transmembrane protein 54). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 41.4), Brain (RPKM 20.8) and 2 other tissues See more
    Orthologs
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    Genomic context

    See Tmem54 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (146733557..146740048)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (141449191..141455683)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (147288700..147295191)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 7-like Neighboring gene adenylate kinase 2 Neighboring gene uncharacterized LOC102551249 Neighboring gene ring finger protein 19B Neighboring gene hippocalcin Neighboring gene fibronectin type III domain containing 5 Neighboring gene S100P binding protein Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Clone Names

    • MGC124700

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane  

    General protein information

    Preferred Names
    transmembrane protein 54
    Names
    beta-casein-like protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034151.1NP_001029323.1  transmembrane protein 54

      See identical proteins and their annotated locations for NP_001029323.1

      Status: PROVISIONAL

      Source sequence(s)
      BC101399
      UniProtKB/Swiss-Prot
      Q494T4
      UniProtKB/TrEMBL
      A0A8I5ZX11
      Related
      ENSRNOP00000089316.1, ENSRNOT00000109320.2
      Conserved Domains (1) summary
      pfam12304
      Location:18197
      BCLP; Beta-casein like protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      146733557..146740048
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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