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    Gdap1l1 ganglioside-induced differentiation-associated protein 1-like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 311616, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Gdap1l1provided by RGD
    Official Full Name
    ganglioside-induced differentiation-associated protein 1-like 1provided by RGD
    Primary source
    RGD:1304960
    See related
    EnsemblRapid:ENSRNOG00000008790 AllianceGenome:RGD:1304960
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Gdap1l
    Summary
    Predicted to be located in mitochondrion. Orthologous to human GDAP1L1 (ganglioside induced differentiation associated protein 1 like 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 73.5) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Gdap1l1 in Genome Data Viewer
    Location:
    3q42
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (172529523..172549128)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (152110225..152129693)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (159823791..159843260)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene junctophilin 2 Neighboring gene oxidative stress responsive serine-rich 1 Neighboring gene uncharacterized LOC120101779 Neighboring gene uncharacterized LOC103691964 Neighboring gene fat storage-inducing transmembrane protein 2 Neighboring gene uncharacterized LOC102548241 Neighboring gene R3H domain containing-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context. Morgenstern M, et al. Cell Metab, 2021 Dec 7. PMID 34800366, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ganglioside-induced differentiation-associated protein 1-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107798.2 → NP_001101268.1  ganglioside-induced differentiation-associated protein 1-like 1

      See identical proteins and their annotated locations for NP_001101268.1

      Status: PROVISIONAL

      Source sequence(s)
      BC168159
      UniProtKB/TrEMBL
      A0A9K3Y7Q6, B4F774, F1LSQ4
      Related
      ENSRNOP00000011748.6, ENSRNOT00000011748.9
      Conserved Domains (2) summary
      cd03052
      Location:47 → 119
      GST_N_GDAP1; GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have ...
      cl02776
      Location:200 → 310
      GST_C_family; C-terminal, alpha helical domain of the Glutathione S-transferase family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      172529523..172549128
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063283869.1 → XP_063139939.1  ganglioside-induced differentiation-associated protein 1-like 1 isoform X1

    RNA

    1. XR_010064635.1 RNA Sequence

    2. XR_010064637.1 RNA Sequence

    3. XR_010064636.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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