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    Egln1-ps2 egl-9 family hypoxia-inducible factor 1, pseudogene 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 690182, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Egln1-ps2provided by RGD
    Official Full Name
    egl-9 family hypoxia-inducible factor 1, pseudogene 2provided by RGD
    Primary source
    RGD:1583990
    See related
    AllianceGenome:RGD:1583990
    Gene type
    pseudo
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Muscle (RPKM 251.5), Heart (RPKM 178.0) and 9 other tissues See more
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    Genomic context

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    See Egln1-ps2 in Genome Data Viewer
    Location:
    1q33
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (169677823..169679842, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (160266448..160268021, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (173283062..173285301)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L17 Neighboring gene uncharacterized LOC134483767 Neighboring gene GTPase, very large interferon inducible 1 Neighboring gene GTPase, very large interferon inducible 1 Neighboring gene UPF0461 protein C5orf24 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Hypoxic preconditioning produces differential expression of hypoxia-inducible factor-1alpha (HIF-1alpha) and its regulatory enzyme HIF prolyl hydroxylase 2 in neonatal rat brain. Jones NM, et al. Neurosci Lett, 2006 Aug 14. PMID 16828226

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. In vivo exposure to systemic hypoxia elevates the expression of PHD-2 protein in brain.
      Title: Hypoxic preconditioning produces differential expression of hypoxia-inducible factor-1alpha (HIF-1alpha) and its regulatory enzyme HIF prolyl hydroxylase 2 in neonatal rat brain.
    Submit: New GeneRIF Correction

    General gene information

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    Other Names

    • egl nine homolog 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      169677823..169679842 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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