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    Tex36 testis expressed 36 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499279, updated on 9-Dec-2024

    Summary

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    Symbol
    Tex36provided by RGD
    Full Name
    testis expressed 36provided by RGD
    Primary source
    RGD:1566410
    See related
    EnsemblRapid:ENSRNOG00000026848 AllianceGenome:RGD:1566410
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human TEX36 (testis expressed 36). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 485.6) and Kidney (RPKM 88.3) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tex36 in Genome Data Viewer
    Location:
    1q41
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (197820066..197834473, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (188390062..188404448, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (205615759..205630073, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102552773 Neighboring gene uncharacterized LOC134485185 Neighboring gene uncharacterized LOC134485186 Neighboring gene uncharacterized LOC120099946 Neighboring gene uncharacterized LOC103690347 Neighboring gene uncharacterized LOC102552907

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    testis-expressed protein 36
    Names
    hypothetical gene supported by BC079265
    testis-expressed sequence 36 protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024288.1 → NP_001019459.1  testis-expressed protein 36

      See identical proteins and their annotated locations for NP_001019459.1

      Status: PROVISIONAL

      Source sequence(s)
      BC079265
      UniProtKB/TrEMBL
      A6HX18, Q6AXY6
      Related
      ENSRNOP00000073474.1, ENSRNOT00000086703.3
      Conserved Domains (1) summary
      pfam15115
      Location:1 → 171
      HDNR; Domain of unknown function with conserved HDNR motif

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      197820066..197834473 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039087843.2 → XP_038943771.1  testis-expressed protein 36 isoform X1

      Conserved Domains (1) summary
      pfam15115
      Location:1 → 88
      HDNR; Domain of unknown function with conserved HDNR motif

    RNA

    1. XR_005490820.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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