U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tmem164 transmembrane protein 164 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 367763, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Tmem164provided by RGD
    Official Full Name
    transmembrane protein 164provided by RGD
    Primary source
    RGD:1563286
    See related
    EnsemblRapid:ENSRNOG00000012787 AllianceGenome:RGD:1563286
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563286
    Summary
    Predicted to be involved in positive regulation of ferroptosis. Predicted to be located in membrane. Orthologous to human TMEM164 (transmembrane protein 164). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 177.8), Lung (RPKM 144.5) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Tmem164 in Genome Data Viewer
    Location:
    Xq33
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (111084830..111245419)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (106288019..106448642)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (113947355..114110064)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L39 like 2 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene microRNA 652 Neighboring gene U2 spliceosomal RNA Neighboring gene AMMECR nuclear protein 1 Neighboring gene retrotransposon Gag like 9

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in positive regulation of ferroptosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in positive regulation of ferroptosis ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    transmembrane protein 164

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109014.2 → NP_001102484.1  transmembrane protein 164 isoform 2

      See identical proteins and their annotated locations for NP_001102484.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      A6KG75, D3ZFX1
      Conserved Domains (1) summary
      pfam14808
      Location:10 → 272
      TMEM164; TMEM164 family

    2. NM_001434311.1 → NP_001421240.1  transmembrane protein 164 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021

    3. NM_001434312.1 → NP_001421241.1  transmembrane protein 164 isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      A6KG77

    4. NM_001434313.1 → NP_001421242.1  transmembrane protein 164 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021

    5. NM_001434314.1 → NP_001421243.1  transmembrane protein 164 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021

    6. NM_001434315.1 → NP_001421244.1  transmembrane protein 164 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      A6KG75, D3ZFX1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      111084830..111245419
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008773428.4 → XP_008771650.1  transmembrane protein 164 isoform X5

      Conserved Domains (1) summary
      pfam14808
      Location:1 → 124
      TMEM164; TMEM164 family

    2. XM_039099940.2 → XP_038955868.1  transmembrane protein 164 isoform X5

      Conserved Domains (1) summary
      pfam14808
      Location:1 → 124
      TMEM164; TMEM164 family

    3. XM_039099941.2 → XP_038955869.1  transmembrane protein 164 isoform X5

      Conserved Domains (1) summary
      pfam14808
      Location:1 → 124
      TMEM164; TMEM164 family

    4. XM_008773426.3 → XP_008771648.1  transmembrane protein 164 isoform X1

      Related
      ENSRNOP00000062249.1, ENSRNOT00000068431.4
      Conserved Domains (1) summary
      pfam14808
      Location:10 → 272
      TMEM164; TMEM164 family

    5. XM_039099938.2 → XP_038955866.1  transmembrane protein 164 isoform X4

      Conserved Domains (1) summary
      pfam14808
      Location:23 → 166
      TMEM164; TMEM164 family

    6. XM_063280174.1 → XP_063136244.1  transmembrane protein 164 isoform X3

    7. XM_063280173.1 → XP_063136243.1  transmembrane protein 164 isoform X2

    8. XM_063280175.1 → XP_063136245.1  transmembrane protein 164 isoform X5

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools