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    Ervv-2 endogenous retrovirus group V member 2, envelope [ Rattus norvegicus (Norway rat) ]

    Gene ID: 103691893, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ervv-2provided by RGD
    Official Full Name
    endogenous retrovirus group V member 2, envelopeprovided by RGD
    Primary source
    RGD:9302596
    See related
    EnsemblRapid:ENSRNOG00000082972 AllianceGenome:RGD:9302596
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Erv3
    Summary
    Orthologous to human ERVV-2 (endogenous retrovirus group V member 2, envelope). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Ervv-2 in Genome Data Viewer
    Location:
    3q36
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (139582024..139587909, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (119129119..119135004, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (124458781..124478514, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134486446 Neighboring gene spermine oxidase Neighboring gene adrenoceptor alpha 1D Neighboring gene uncharacterized LOC120101666 Neighboring gene cytochrome c, somatic, pseudogene 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Characterization of the endogenous retrovirus-derived placenta-specific soluble protein EnvV-Fca from domestic cats. Pramono D, et al. FEBS Lett, 2024 Jul. PMID 38604984
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    endogenous retrovirus group V member 2, envelope
    Names
    endogenous retroviral sequence 3
    putative ERV-F(c)1 provirus ancestral Env polyprotein
    putative endogenous retrovirus group FC1 Env polyprotein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001408907.1 → NP_001395836.1  endogenous retrovirus group V member 2, envelope precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A6HQE7, D3ZVK6
      Related
      ENSRNOP00000106448.1, ENSRNOT00000133104.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      139582024..139587909 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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