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    Cimap1a ciliary microtubule associated protein 1A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 365387, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Cimap1aprovided by RGD
    Official Full Name
    ciliary microtubule associated protein 1Aprovided by RGD
    Primary source
    RGD:1310028
    See related
    EnsemblRapid:ENSRNOG00000012858 AllianceGenome:RGD:1310028
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Odf3
    Summary
    Predicted to be active in outer dense fiber. Orthologous to human CIMAP1A (ciliary microtubule associated protein 1A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 125.2) and Brain (RPKM 8.4) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Cimap1a in Genome Data Viewer
    Location:
    1q41
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (205355601..205358882)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (195926034..195929250)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (213596784..213602417)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene Sec61 translocon subunit gamma, pseudogene 3 Neighboring gene protein transport protein Sec61 subunit gamma-like Neighboring gene secretoglobin, family 1C, member 1 Neighboring gene Bet1 golgi vesicular membrane trafficking protein-like Neighboring gene RIC8 guanine nucleotide exchange factor A Neighboring gene sirtuin 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Molecular cloning and characterization of oppo 1: a haploid germ cell-specific complementary DNA encoding sperm tail protein. Nakamura Y, et al. Biol Reprod, 2002 Jul. PMID 12079992
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in flagellated sperm motility ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoskeleton IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in outer dense fiber IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in outer dense fiber ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in sperm flagellum ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    ciliary microtubule associated protein 1A
    Names
    outer dense fiber of sperm tails 3
    outer dense fiber protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108924.1 → NP_001102394.1  ciliary microtubule associated protein 1A

      See identical proteins and their annotated locations for NP_001102394.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473953
      UniProtKB/TrEMBL
      A6HXK8, D3ZE94
      Related
      ENSRNOP00000017562.3, ENSRNOT00000017562.6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      205355601..205358882
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006230563.5 → XP_006230625.1  ciliary microtubule associated protein 1A isoform X1

    2. XM_039085385.2 → XP_038941313.1  ciliary microtubule associated protein 1A isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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