U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Fam167a family with sequence similarity 167, member A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498533, updated on 9-Dec-2024

    Summary

    Official Symbol
    Fam167aprovided by RGD
    Official Full Name
    family with sequence similarity 167, member Aprovided by RGD
    Primary source
    RGD:1561302
    See related
    EnsemblRapid:ENSRNOG00000011316 AllianceGenome:RGD:1561302
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1561302
    Summary
    Orthologous to human FAM167A (family with sequence similarity 167 member A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 28.2), Lung (RPKM 26.7) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Fam167a in Genome Data Viewer
    Location:
    15p12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (41861271..41891427)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (37685221..37715472)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (46613761..46643771)

    Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120097012 Neighboring gene BLK proto-oncogene, Src family tyrosine kinase Neighboring gene uncharacterized LOC120097013 Neighboring gene L-threonine dehydrogenase Neighboring gene myotubularin related protein 9

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109102.2NP_001102572.1  protein FAM167A

      See identical proteins and their annotated locations for NP_001102572.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000015
      UniProtKB/TrEMBL
      A6K6G2, D3ZQX1
      Conserved Domains (1) summary
      pfam11652
      Location:131215
      DUF3259; Protein of unknown function (DUF3259)
    2. NM_001434438.1NP_001421367.1  protein FAM167A

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000015
      UniProtKB/TrEMBL
      A6K6G2, D3ZQX1

    RNA

    1. NR_197786.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000015

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086033.1 Reference GRCr8

      Range
      41861271..41891427
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008770771.4XP_008768993.1  protein FAM167A isoform X1

      Related
      ENSRNOP00000015055.2, ENSRNOT00000015055.6
      Conserved Domains (1) summary
      pfam11652
      Location:131215
      DUF3259; Protein of unknown function (DUF3259)
    2. XM_063274553.1XP_063130623.1  protein FAM167A isoform X2

    3. XM_063274552.1XP_063130622.1  protein FAM167A isoform X1