U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ankrd10 ankyrin repeat domain 10 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361183, updated on 27-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Ankrd10provided by RGD
    Official Full Name
    ankyrin repeat domain 10provided by RGD
    Primary source
    RGD:1310501
    See related
    AllianceGenome:RGD:1310501
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable chloroplast targeting sequence binding activity. Predicted to be involved in protein targeting to chloroplast. Predicted to be located in nucleoplasm. Orthologous to human ANKRD10 (ankyrin repeat domain 10). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 180.9), Thymus (RPKM 176.0) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Ankrd10 in Genome Data Viewer
    Location:
    16q12.5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (84566021..84591849)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (77866489..77889745)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (83205898..83229147)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134482535 Neighboring gene Rho guanine nucleotide exchange factor 7 Neighboring gene uncharacterized LOC134482534 Neighboring gene uncharacterized LOC120097568 Neighboring gene inhibitor of growth family, member 1 Neighboring gene uncharacterized LOC134482536 Neighboring gene cysteinyl-tRNA synthetase 2, mitochondrial

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables chloroplast targeting sequence binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein targeting to chloroplast IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ankyrin repeat domain-containing protein 10

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001271219.2 → NP_001258148.1  ankyrin repeat domain-containing protein 10

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000016
      UniProtKB/TrEMBL
      F1LPK2
      Conserved Domains (2) summary
      COG0666
      Location:46 → 188
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:56 → 88
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      84566021..84591849
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063275580.1 → XP_063131650.1  ankyrin repeat domain-containing protein 10 isoform X4

    2. XM_006253453.5 → XP_006253515.4  ankyrin repeat domain-containing protein 10 isoform X1

    3. XM_006253454.4 → XP_006253516.2  ankyrin repeat domain-containing protein 10 isoform X2

    4. XM_039094691.2 → XP_038950619.1  ankyrin repeat domain-containing protein 10 isoform X3

    5. XM_039094692.2 → XP_038950620.1  ankyrin repeat domain-containing protein 10 isoform X2

    6. XM_006253459.5 → XP_006253521.1  ankyrin repeat domain-containing protein 10 isoform X2

      See identical proteins and their annotated locations for XP_006253521.1

    7. XM_063275579.1 → XP_063131649.1  ankyrin repeat domain-containing protein 10 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools